Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CLB_RS05350 Genome accession   NC_009697
Coordinates   1119059..1120012 (+) Length   317 a.a.
NCBI ID   WP_011948718.1    Uniprot ID   A0A0M1LA37
Organism   Clostridium botulinum A str. ATCC 19397     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1114059..1125012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLB_RS05325 (CLB_1080) - 1114180..1114416 (+) 237 WP_011948713.1 SHOCT domain-containing protein -
  CLB_RS05330 (CLB_1081) - 1114686..1115387 (+) 702 WP_011948714.1 response regulator transcription factor -
  CLB_RS05335 (CLB_1082) - 1115387..1116793 (+) 1407 WP_011948715.1 sensor histidine kinase -
  CLB_RS05340 (CLB_1083) - 1117133..1117819 (-) 687 WP_011948716.1 DNA alkylation repair protein -
  CLB_RS05345 (CLB_1084) - 1118055..1118813 (-) 759 WP_011948717.1 helix-turn-helix domain-containing protein -
  CLB_RS05350 (CLB_1085) ceuB 1119059..1120012 (+) 954 WP_011948718.1 ABC transporter permease Machinery gene
  CLB_RS05355 (CLB_1086) - 1120002..1120952 (+) 951 WP_011948719.1 iron chelate uptake ABC transporter family permease subunit -
  CLB_RS05360 (CLB_1087) - 1120949..1121704 (+) 756 WP_011948720.1 ABC transporter ATP-binding protein -
  CLB_RS05365 (CLB_1088) - 1121778..1122722 (+) 945 WP_011948721.1 siderophore ABC transporter substrate-binding protein -
  CLB_RS05370 (CLB_1089) - 1122924..1123925 (+) 1002 WP_011986199.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34889.26 Da        Isoelectric Point: 9.9543

>NTDB_id=28687 CLB_RS05350 WP_011948718.1 1119059..1120012(+) (ceuB) [Clostridium botulinum A str. ATCC 19397]
MKKRYLILALIILSICSIFIGVKDISFIDIFNSDDVKLKVLLISRIPRLISIIVVGVSMSIAGLIMQQISRNKFVSPDTA
STIDSAKLGVLVALMIFPSATLTEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYDLI
QSIASWLQGDFSLIIKGNYELIYFSLPLVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLCSTALLGAVFLLGCDILGRLVIYPYEISIGLVVGVIGSMVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=28687 CLB_RS05350 WP_011948718.1 1119059..1120012(+) (ceuB) [Clostridium botulinum A str. ATCC 19397]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TATAGATATATTTAATTCAGATGATGTGAAGCTTAAGGTATTATTAATTAGTAGAATCCCAAGACTTATAAGTATTATTG
TAGTAGGGGTTAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGAAATAAATTTGTATCTCCAGATACAGCT
TCAACTATAGATAGTGCAAAGCTTGGGGTTTTAGTTGCTTTAATGATATTTCCTTCAGCAACTCTTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGTACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATCT
TCATACCACTCGTAGGTATAATGCTTGGAAATATAATAGATTCAATAACTACGTTTTTTGCATATAAATATGATCTTATT
CAAAGTATTGCCTCTTGGCTTCAAGGTGATTTTTCTTTAATTATTAAAGGAAATTATGAACTTATATATTTTAGTCTACC
ACTTGTAGTCATAGCCTTTATTTATGCTAACAAATTCACAGTAGCAGGTATGGGAGAGGATTTTTCTAAGAATTTAGGTG
TTAATTATAACAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTAGGAAAA
ATACCATTCCTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGGGATAATTTAAAAAATAGTCTTTGTAGTAC
AGCATTGCTTGGAGCAGTATTTCTCTTAGGCTGTGACATATTAGGTAGGTTAGTTATTTATCCCTATGAGATATCTATAG
GACTTGTAGTTGGAGTTATAGGAAGTATGGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1LA37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.125

98.107

0.502

Multiple sequence alignment