Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   EFD68_RS09660 Genome accession   NZ_CP034011
Coordinates   1971382..1972200 (-) Length   272 a.a.
NCBI ID   WP_156668033.1    Uniprot ID   -
Organism   Staphylococcus aureus strain P1D5C1     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1966382..1977200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFD68_RS09640 (EFD68_10065) - 1967475..1968452 (+) 978 WP_000379098.1 metal-dependent hydrolase -
  EFD68_RS09645 (EFD68_10075) - 1968713..1969549 (-) 837 WP_000886462.1 membrane protein -
  EFD68_RS09650 (EFD68_10080) - 1969558..1971075 (-) 1518 WP_000535834.1 ABC transporter ATP-binding protein -
  EFD68_RS09655 (EFD68_10085) - 1971090..1971404 (-) 315 WP_000435806.1 YfhH family protein -
  EFD68_RS09660 (EFD68_10090) recX 1971382..1972200 (-) 819 WP_156668033.1 recombination regulator RecX Regulator
  EFD68_RS09665 (EFD68_10095) sgtB 1972460..1973269 (-) 810 WP_000830384.1 monofunctional peptidoglycan glycosyltransferase SgtB -
  EFD68_RS09670 (EFD68_10100) - 1973609..1974124 (-) 516 WP_000163283.1 type 1 glutamine amidotransferase domain-containing protein -
  EFD68_RS09675 (EFD68_10105) - 1974255..1974416 (-) 162 WP_001005407.1 SE1561 family protein -
  EFD68_RS09680 (EFD68_10110) yfkAB 1974640..1975791 (+) 1152 WP_001089621.1 radical SAM/CxCxxxxC motif protein YfkAB -
  EFD68_RS09685 (EFD68_10115) - 1976051..1976581 (-) 531 WP_000184383.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 32255.11 Da        Isoelectric Point: 5.9211

>NTDB_id=286830 EFD68_RS09660 WP_156668033.1 1971382..1972200(-) (recX) [Staphylococcus aureus strain P1D5C1]
MPKITKIEVQKKNKERFNLFLDEQFEMGIDIDTLVKFNLKKGQQLEAADMAEIQKYDHYRIGLNKAIQYLSYKKRTEKEV
IQYLQKEEISEQAISEVIEYCYREKLIDHQDYAESLKNTMIRTTDKGPKIYQQKLYQLGIEPNIIEMFTELYREQQELDD
IIQIAEKISKTKKGPQNKVKEKVMQSLIQKGFEMEPIHAVLNEMDFTQDEAVLDDLLQRDLEKIYNKNRKKYTQQKLISK
TIEGLMRKGYKYDKIKAKLEESGIADGTEEIE

Nucleotide


Download         Length: 819 bp        

>NTDB_id=286830 EFD68_RS09660 WP_156668033.1 1971382..1972200(-) (recX) [Staphylococcus aureus strain P1D5C1]
GTGCCGAAGATTACTAAAATAGAAGTTCAAAAGAAAAACAAAGAACGTTTTAATCTTTTTTTAGACGAACAATTTGAAAT
GGGTATAGATATCGATACATTAGTCAAATTTAATTTAAAAAAAGGGCAACAACTTGAAGCTGCTGACATGGCAGAGATTC
AAAAGTATGATCATTATCGCATAGGTTTAAACAAAGCAATCCAATATTTATCATATAAAAAGAGAACTGAAAAAGAAGTT
ATTCAATATTTACAAAAAGAAGAGATATCAGAGCAAGCGATTTCTGAAGTGATTGAATATTGTTATCGCGAAAAGTTAAT
CGACCATCAAGATTATGCGGAAAGTTTAAAAAATACAATGATTCGCACGACAGATAAAGGACCTAAAATTTATCAACAAA
AACTTTATCAACTTGGTATAGAACCAAATATCATTGAAATGTTTACAGAACTTTATAGAGAACAACAGGAACTTGATGAT
ATTATCCAAATTGCTGAAAAAATATCTAAAACAAAAAAAGGACCACAAAATAAGGTTAAAGAAAAAGTAATGCAATCTTT
AATTCAAAAAGGGTTTGAAATGGAACCCATTCATGCTGTATTGAATGAAATGGATTTTACACAAGATGAAGCGGTTTTAG
ACGATTTATTACAACGAGATTTAGAAAAAATTTATAATAAAAATCGAAAGAAGTACACGCAACAGAAATTAATTTCAAAA
ACTATCGAAGGCCTTATGAGAAAAGGATATAAATATGATAAAATTAAAGCTAAATTAGAAGAAAGTGGTATTGCCGATGG
AACAGAAGAAATTGAGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(84-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

99.265

100

0.993