Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DA106_RS12425 Genome accession   NZ_CP028716
Coordinates   2499590..2500186 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain SCM96     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2494590..2505186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA106_RS12400 - 2494782..2496539 (-) 1758 WP_032408789.1 Lon protease family protein -
  DA106_RS12405 matP 2496725..2497177 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  DA106_RS12410 ompA 2497309..2498379 (-) 1071 WP_002898408.1 porin OmpA -
  DA106_RS12415 sulA 2498732..2499241 (-) 510 WP_004893150.1 SOS-induced cell division inhibitor SulA -
  DA106_RS12425 sxy/tfoX 2499590..2500186 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  DA106_RS12430 yccS 2500200..2502335 (-) 2136 WP_004147856.1 YccS family putative transporter -
  DA106_RS12435 - 2502353..2502799 (-) 447 WP_002898425.1 YccF domain-containing protein -
  DA106_RS12440 helD 2502924..2504978 (+) 2055 WP_020324408.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=286661 DA106_RS12425 WP_004179217.1 2499590..2500186(+) (sxy/tfoX) [Klebsiella pneumoniae strain SCM96]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=286661 DA106_RS12425 WP_004179217.1 2499590..2500186(+) (sxy/tfoX) [Klebsiella pneumoniae strain SCM96]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment