Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   BCER98_RS02115 Genome accession   NC_009674
Coordinates   413711..414511 (+) Length   266 a.a.
NCBI ID   WP_041810201.1    Uniprot ID   -
Organism   Bacillus cytotoxicus NVH 391-98     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 408711..419511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCER98_RS02105 (Bcer98_0358) - 410907..413096 (-) 2190 WP_011983474.1 DNA topoisomerase III -
  BCER98_RS02115 (Bcer98_0359) ceuB 413711..414511 (+) 801 WP_041810201.1 ABC transporter permease Machinery gene
  BCER98_RS02120 (Bcer98_0360) - 414501..415472 (+) 972 WP_011983476.1 iron chelate uptake ABC transporter family permease subunit -
  BCER98_RS02125 (Bcer98_0361) - 415466..416224 (+) 759 WP_011983477.1 ABC transporter ATP-binding protein -
  BCER98_RS02130 (Bcer98_0362) - 416299..417246 (+) 948 WP_011983478.1 siderophore ABC transporter substrate-binding protein -
  BCER98_RS02135 (Bcer98_0363) thiM 417602..418411 (+) 810 WP_011983479.1 hydroxyethylthiazole kinase -
  BCER98_RS02140 (Bcer98_0364) thiE 418425..419078 (+) 654 WP_011983480.1 thiamine phosphate synthase -
  BCER98_RS22355 (Bcer98_0365) - 419124..419267 (+) 144 WP_157671232.1 hypothetical protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29255.47 Da        Isoelectric Point: 10.4488

>NTDB_id=28629 BCER98_RS02115 WP_041810201.1 413711..414511(+) (ceuB) [Bacillus cytotoxicus NVH 391-98]
MKKRYLFIMLIVLSVASIFIGVKDVSLTDVLHWNQEKMQIVFISRLPRLISIIVAGVSLSISGLIMQQLSRNKFVSPTTA
GTMDSAKLGVLVSLMLFTTASPLEKMFIAFIFALAGTFLFMQILKRIKFKDAIFIPLVIIAFLYANRFTVAGMGEDFAAN
LGMNYNRVLNIGLIIVSLISALVVLTVGMIPFLGLIIPNIVSIYRGDHLKNSLPHTALLGAVFVLACDILGRVVIYPYEI
SIGLTVGVIGSGIFLYLLMRRNAYAT

Nucleotide


Download         Length: 801 bp        

>NTDB_id=28629 BCER98_RS02115 WP_041810201.1 413711..414511(+) (ceuB) [Bacillus cytotoxicus NVH 391-98]
ATGAAAAAAAGATATTTATTTATCATGCTTATTGTTTTATCGGTTGCATCTATTTTTATTGGTGTAAAAGATGTGAGTCT
AACAGATGTTTTGCATTGGAATCAAGAGAAAATGCAAATTGTATTTATCAGTAGATTACCACGTCTCATTAGTATTATTG
TTGCTGGTGTCAGTTTAAGTATAAGTGGTTTAATTATGCAGCAACTGAGCAGAAATAAGTTTGTATCTCCAACAACTGCG
GGAACGATGGATAGTGCAAAGTTGGGCGTTTTAGTCTCCTTAATGTTATTTACGACAGCAAGCCCGCTTGAAAAAATGTT
TATCGCATTTATTTTTGCGCTAGCTGGTACATTTTTGTTTATGCAAATTTTAAAGCGAATTAAATTTAAAGATGCCATTT
TTATTCCGCTTGTAATCATCGCCTTTTTATATGCAAATCGTTTTACCGTTGCTGGAATGGGGGAAGATTTTGCAGCGAAT
TTAGGAATGAATTACAATCGAGTGCTAAATATTGGGCTTATTATCGTTTCTCTCATCTCTGCATTAGTTGTTTTAACTGT
TGGGATGATTCCATTTTTAGGACTTATTATTCCAAATATCGTTTCAATTTATCGCGGAGATCATTTGAAAAATAGTTTAC
CTCATACTGCCTTGTTAGGAGCTGTTTTTGTACTAGCTTGCGATATACTTGGTAGGGTCGTAATTTATCCGTATGAAATT
TCGATTGGTCTTACAGTAGGAGTGATCGGAAGCGGAATCTTCCTTTATTTATTAATGAGGAGAAACGCATATGCAACATA
G

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(133-260)

FecCD transport family (FecCD)

(10-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

44.409

100

0.523

Multiple sequence alignment