Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BCER98_RS00020 Genome accession   NC_009674
Coordinates   3538..4659 (+) Length   373 a.a.
NCBI ID   WP_011983151.1    Uniprot ID   A7GJS2
Organism   Bacillus cytotoxicus NVH 391-98     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCER98_RS00005 (Bcer98_0001) dnaA 521..1861 (+) 1341 WP_011983148.1 chromosomal replication initiator protein DnaA -
  BCER98_RS00010 (Bcer98_0002) dnaN 2043..3188 (+) 1146 WP_011983149.1 DNA polymerase III subunit beta -
  BCER98_RS00015 (Bcer98_0003) yaaA 3313..3525 (+) 213 WP_011983150.1 S4 domain-containing protein YaaA -
  BCER98_RS00020 (Bcer98_0004) recF 3538..4659 (+) 1122 WP_011983151.1 DNA replication/repair protein RecF Machinery gene
  BCER98_RS00025 (Bcer98_0005) gyrB 4698..6620 (+) 1923 WP_011983152.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BCER98_RS00030 (Bcer98_0006) gyrA 6711..9176 (+) 2466 WP_011983153.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 43134.46 Da        Isoelectric Point: 6.7810

>NTDB_id=28623 BCER98_RS00020 WP_011983151.1 3538..4659(+) (recF) [Bacillus cytotoxicus NVH 391-98]
MFISEIQLKNYRNYEDLNLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDYGKIKGRLQKRNSS
VSLELNISKKGKKAKLNELEQQKLSQYIGEMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKAMQGKNEETMLDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKIKE
VYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYAEVKEYPILLLDDVLSEL
DDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKKAKTIHVKSGTVDCEIDRI

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=28623 BCER98_RS00020 WP_011983151.1 3538..4659(+) (recF) [Bacillus cytotoxicus NVH 391-98]
TTGTTTATTTCAGAAATACAATTAAAAAATTATCGAAATTATGAAGATTTAAACCTTTCTTTTGAGGATAAAGTCAATGT
AATCATTGGTGAAAATGCACAAGGGAAAACAAATTTGATGGAAGCGATCTATGTGTTAGCAATGGCGAAATCTCATAGAA
CTTCAAATGATCGTGAACTCATCCGATGGGATGAGGATTATGGTAAAATAAAAGGTAGATTACAAAAACGAAATAGTTCC
GTATCTTTGGAATTAAATATTTCTAAAAAAGGAAAAAAGGCAAAATTGAATGAACTTGAACAACAAAAGTTGAGCCAATA
TATTGGTGAGATGAACGTTGTTATGTTTGCCCCTGAAGATTTAAATCTTGTAAAAGGAAGTCCTCAAGTCAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTTTATTTGTATGAATTAAGTCAATATCAAAAAGTGCTCACACAACGA
AACCATTTGCTTAAGGCAATGCAAGGTAAAAATGAGGAAACGATGTTGGATGTATTTACGCTTCAACTTATTGAACATGG
TACGAAAATTCTACAAAAACGTTTTGAATTCTTACATTTACTACAAGAGTGGGCTGCTCCAATCCATCGTGGGATTAGCA
GAGGGCTTGAGGAATTGGAAATCGTTTATAAGCCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATAAAAGAA
GTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCGTGATGA
TTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGCTCACAAGGCCAGCAACGAACAACTGCACTATCCCTAA
AATTAGCTGAAATTGAATTGATTTATGCAGAGGTAAAAGAGTACCCAATTCTTTTATTAGATGATGTATTATCAGAATTA
GATGATTACCGTCAATCACATCTTTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGTCGACGG
AATTGAACACGAAACATTAAAAAAAGCGAAAACAATTCATGTAAAAAGCGGCACGGTAGATTGTGAAATAGACAGAATAT
AA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GJS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.66

0.657

Multiple sequence alignment