Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPG27_RS05935 Genome accession   NC_011333
Coordinates   1250048..1251097 (+) Length   349 a.a.
NCBI ID   WP_000115470.1    Uniprot ID   B5Z8I7
Organism   Helicobacter pylori G27     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1245048..1256097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPG27_RS05920 (HPG27_1133) - 1246014..1247198 (-) 1185 WP_001121674.1 DUF874 family protein -
  HPG27_RS05925 (HPG27_1134) asd 1247631..1248671 (-) 1041 WP_000860930.1 aspartate-semialdehyde dehydrogenase -
  HPG27_RS05930 (HPG27_1135) hisS 1248658..1249986 (-) 1329 WP_000632444.1 histidine--tRNA ligase -
  HPG27_RS05935 (HPG27_1136) waaF 1250048..1251097 (+) 1050 WP_000115470.1 lipopolysaccharide heptosyltransferase II Regulator
  HPG27_RS05940 (HPG27_1137) - 1251286..1251720 (-) 435 WP_000744159.1 hypothetical protein -
  HPG27_RS05945 (HPG27_1138) - 1251938..1252927 (+) 990 WP_001187415.1 aldo/keto reductase -
  HPG27_RS05950 (HPG27_1139) fusA 1253443..1255521 (-) 2079 WP_000101848.1 elongation factor G -
  HPG27_RS05955 (HPG27_1140) rpsG 1255533..1256000 (-) 468 WP_001254352.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39527.24 Da        Isoelectric Point: 9.5546

>NTDB_id=28618 HPG27_RS05935 WP_000115470.1 1250048..1251097(+) (waaF) [Helicobacter pylori G27]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDIAITLNNHFYSAFFLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDTIVSEEILKLIKGSLKNPLLSH
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASVQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLEAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=28618 HPG27_RS05935 WP_000115470.1 1250048..1251097(+) (waaF) [Helicobacter pylori G27]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTCTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTTTATTCCGCTTTTTTTCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATACTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCCTTATTATCCCAC
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCAATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGTGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTGCACCTTGTAAAAAGCGAGTTTGCCCC
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z8I7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.416

97.708

0.375

Multiple sequence alignment