Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   HPG27_RS05760 Genome accession   NC_011333
Coordinates   1209956..1210729 (+) Length   257 a.a.
NCBI ID   WP_000404548.1    Uniprot ID   B5Z8F3
Organism   Helicobacter pylori G27     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1204956..1215729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPG27_RS05755 (HPG27_1101) hopL 1206259..1209943 (+) 3685 Protein_1115 Hop family outer membrane protein HopL -
  HPG27_RS05760 (HPG27_1102) proC 1209956..1210729 (+) 774 WP_000404548.1 pyrroline-5-carboxylate reductase Machinery gene
  HPG27_RS05765 (HPG27_1103) - 1210756..1211289 (+) 534 WP_000549921.1 Fic/DOC family protein -
  HPG27_RS05770 (HPG27_1104) ybeY 1211525..1211953 (-) 429 WP_000889548.1 rRNA maturation RNase YbeY -
  HPG27_RS05775 (HPG27_1105) - 1212007..1212501 (-) 495 WP_000516065.1 flavodoxin -
  HPG27_RS05780 (HPG27_1106) - 1212593..1213174 (-) 582 WP_012552530.1 DedA family protein -
  HPG27_RS05785 (HPG27_1107) ccoS 1213308..1213505 (+) 198 WP_001090947.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  HPG27_RS05790 (HPG27_1108) - 1213531..1214505 (+) 975 WP_000371786.1 NAD(P)/FAD-dependent oxidoreductase -
  HPG27_RS05795 (HPG27_1109) - 1214512..1215672 (-) 1161 WP_000944777.1 HP1165 family MFS efflux transporter -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28241.90 Da        Isoelectric Point: 8.3369

>NTDB_id=28617 HPG27_RS05760 WP_000404548.1 1209956..1210729(+) (proC) [Helicobacter pylori G27]
MEILQFIGYGNMAQAILEGSHEILSKRFTLEITGRNPEKIAPFLQEKNIQAQIVPYKNAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVNFETLSNAINSLHYLKCMPNIASKFALSSTAVCEKSPMPLISQKALSVIESFGNCVRVGNEEQVD
ASIATNGSALAFLSLVASSLKDAGIREGLNAKDSLELVKMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIEACHESVKKMHL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=28617 HPG27_RS05760 WP_000404548.1 1209956..1210729(+) (proC) [Helicobacter pylori G27]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCTCTCATGAAATTTTATCCAAGCG
TTTTACTTTAGAAATTACCGGGCGAAACCCTGAAAAAATCGCCCCTTTTTTACAAGAAAAAAACATTCAAGCCCAAATTG
TGCCTTACAAAAACGCTATTGACATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTACAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCCAAAAGCGTTTTGAGCGCGTTAGCTGGCGTAAATTTTGAAACTTTAAGCAATGCGATTAATTCTTT
ACATTACTTAAAATGCATGCCTAACATTGCGAGCAAGTTCGCCCTTTCTTCTACGGCGGTGTGCGAAAAATCGCCCATGC
CCTTAATAAGCCAAAAGGCTTTGAGTGTTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGTAATGAAGAGCAGGTGGAT
GCCAGTATAGCGACCAATGGGAGTGCGCTCGCTTTTTTGAGCTTGGTAGCGAGCAGTTTGAAAGACGCCGGCATTAGAGA
GGGCTTGAACGCTAAAGATTCTTTAGAATTGGTGAAGATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CTGAAATGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGAGGAGCGTTTATAGAAGCATGCCATGAAAGCGTGAAAAAAATGCACCTCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z8F3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.008

98.833

0.366

Multiple sequence alignment