Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HPG27_RS05025 | Genome accession | NC_011333 |
| Coordinates | 1056088..1057323 (+) | Length | 411 a.a. |
| NCBI ID | WP_000734985.1 | Uniprot ID | B5Z821 |
| Organism | Helicobacter pylori G27 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1051088..1062323
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPG27_RS05010 (HPG27_964) | - | 1051500..1053434 (+) | 1935 | WP_041201379.1 | type IA DNA topoisomerase | - |
| HPG27_RS08745 | - | 1053434..1053562 (+) | 129 | WP_001185489.1 | hypothetical protein | - |
| HPG27_RS05015 (HPG27_965) | - | 1053564..1054550 (+) | 987 | WP_000416483.1 | VirB8/TrbF family protein | - |
| HPG27_RS05020 (HPG27_966) | - | 1054550..1056091 (+) | 1542 | WP_000714791.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| HPG27_RS05025 (HPG27_967) | comB10 | 1056088..1057323 (+) | 1236 | WP_000734985.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPG27_RS05030 (HPG27_968) | - | 1057393..1057689 (+) | 297 | WP_000773933.1 | hypothetical protein | - |
| HPG27_RS05035 | - | 1057679..1057942 (+) | 264 | WP_000578855.1 | hypothetical protein | - |
| HPG27_RS05040 (HPG27_969) | - | 1057939..1058237 (+) | 299 | Protein_984 | hypothetical protein | - |
| HPG27_RS05045 (HPG27_970) | - | 1058237..1059178 (+) | 942 | WP_000625134.1 | ATPase, T2SS/T4P/T4SS family | - |
| HPG27_RS05050 (HPG27_971) | - | 1059175..1059630 (+) | 456 | WP_000795414.1 | hypothetical protein | - |
| HPG27_RS05055 (HPG27_972) | - | 1059627..1059917 (+) | 291 | WP_000159819.1 | hypothetical protein | - |
| HPG27_RS05060 (HPG27_973) | - | 1059918..1060475 (+) | 558 | WP_001167793.1 | hypothetical protein | - |
| HPG27_RS05065 (HPG27_974) | - | 1060476..1062203 (+) | 1728 | WP_001208197.1 | type IV secretory system conjugative DNA transfer family protein | - |
Sequence
Protein
Download Length: 411 a.a. Molecular weight: 46456.50 Da Isoelectric Point: 10.0077
>NTDB_id=28614 HPG27_RS05025 WP_000734985.1 1056088..1057323(+) (comB10) [Helicobacter pylori G27]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIIAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMRDQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEILAKFF
NEEKEQNNDTK
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIIAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMRDQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEILAKFF
NEEKEQNNDTK
Nucleotide
Download Length: 1236 bp
>NTDB_id=28614 HPG27_RS05025 WP_000734985.1 1056088..1057323(+) (comB10) [Helicobacter pylori G27]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCTCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAATGAAGAAGAAAAAACCCGCCTTGTGATTT
TGGCGTCTCGTATTAGCAGTCAAAAAGAAACGCAACCTCCAACCTCTATAAAAAATAGTGTTTCTAACACAAAATCCAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGCAGTGAAATAGGGGGGA
GTAAGATAATCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCCAAAGGGAGTAGAGCC
ATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTTAATATCATACTAAGCGATGCTAAGGGAGCTGATGTCAAGGGCTATAACGGCATGATAGGAACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAGGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATAACATTATCGCTCAAATCATGCGAGATCAAATCAGGATTAAGCCCATTATCACTATTAGAGAGG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAGATCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCTCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAATGAAGAAGAAAAAACCCGCCTTGTGATTT
TGGCGTCTCGTATTAGCAGTCAAAAAGAAACGCAACCTCCAACCTCTATAAAAAATAGTGTTTCTAACACAAAATCCAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGCAGTGAAATAGGGGGGA
GTAAGATAATCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCCAAAGGGAGTAGAGCC
ATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTTAATATCATACTAAGCGATGCTAAGGGAGCTGATGTCAAGGGCTATAACGGCATGATAGGAACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAGGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATAACATTATCGCTCAAATCATGCGAGATCAAATCAGGATTAAGCCCATTATCACTATTAGAGAGG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAGATCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
54.828 |
70.56 |
0.387 |