Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EHF40_RS07420 Genome accession   NZ_CP033907
Coordinates   1415227..1415835 (+) Length   202 a.a.
NCBI ID   WP_002983622.1    Uniprot ID   P65998
Organism   Streptococcus pyogenes strain Duke-Large     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1410227..1420835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHF40_RS07390 (EHF40_07390) - 1410474..1410956 (+) 483 WP_021299075.1 S-ribosylhomocysteine lyase -
  EHF40_RS07395 (EHF40_07395) - 1411101..1412570 (-) 1470 WP_002983629.1 cell division site-positioning protein MapZ family protein -
  EHF40_RS07400 (EHF40_07400) - 1412584..1413738 (-) 1155 WP_011528863.1 class I SAM-dependent RNA methyltransferase -
  EHF40_RS07410 (EHF40_07410) gpsB 1414183..1414509 (-) 327 WP_002983626.1 cell division regulator GpsB -
  EHF40_RS07415 (EHF40_07415) - 1414631..1415146 (-) 516 WP_011285056.1 DUF1273 domain-containing protein -
  EHF40_RS07420 (EHF40_07420) recU 1415227..1415835 (+) 609 WP_002983622.1 Holliday junction resolvase RecU Machinery gene
  EHF40_RS07425 (EHF40_07425) pbp1a 1415822..1417987 (+) 2166 WP_009880659.1 penicillin-binding protein PBP1A -
  EHF40_RS07430 (EHF40_07430) pepC 1418454..1419791 (-) 1338 WP_011528864.1 aminopeptidase C -
  EHF40_RS07435 (EHF40_07435) nadE 1419976..1420800 (-) 825 WP_021299057.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23356.93 Da        Isoelectric Point: 9.8725

>NTDB_id=285845 EHF40_RS07420 WP_002983622.1 1415227..1415835(+) (recU) [Streptococcus pyogenes strain Duke-Large]
MVNYPHNLIRQKVSSVQKQTKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYF
RQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQID
NGSKSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=285845 EHF40_RS07420 WP_002983622.1 1415227..1415835(+) (recU) [Streptococcus pyogenes strain Duke-Large]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAACAAAGCAAAATAAGGTGGACTT
CGCCAATAGAGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTC
ACAAAAAACCTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGGGCAAAAATCGTTGAAGCGTACTTT
AGACAAGCTTCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAA
AACAGCTATGCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCT
TTGTCCTTCTTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGAT
AATGGCAGTAAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTCGGAGCCTTTCCACAAGTCCC
TTATTTAAACATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65998

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5