Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   EHF40_RS05520 Genome accession   NZ_CP033907
Coordinates   1030441..1031511 (-) Length   356 a.a.
NCBI ID   WP_002984598.1    Uniprot ID   P0DH45
Organism   Streptococcus pyogenes strain Duke-Large     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1025441..1036511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHF40_RS05500 (EHF40_05500) citX 1026042..1026620 (+) 579 WP_021299257.1 citrate lyase holo-[acyl-carrier protein] synthase -
  EHF40_RS05505 (EHF40_05505) - 1026635..1028029 (+) 1395 WP_021299264.1 oxaloacetate decarboxylase subunit alpha -
  EHF40_RS05510 (EHF40_05510) citC 1028139..1029191 (-) 1053 WP_011528662.1 [citrate (pro-3S)-lyase] ligase -
  EHF40_RS05515 (EHF40_05515) - 1029280..1029762 (-) 483 WP_002984600.1 PASTA domain-containing protein -
  EHF40_RS05520 (EHF40_05520) xerS 1030441..1031511 (-) 1071 WP_002984598.1 tyrosine recombinase XerS Machinery gene
  EHF40_RS05525 (EHF40_05525) - 1031985..1032683 (+) 699 WP_011528664.1 helix-turn-helix transcriptional regulator -
  EHF40_RS05530 (EHF40_05530) ffh 1032800..1034362 (-) 1563 WP_021299250.1 signal recognition particle protein -
  EHF40_RS05535 (EHF40_05535) - 1034377..1034709 (-) 333 WP_002989745.1 putative DNA-binding protein -
  EHF40_RS05540 (EHF40_05540) - 1034807..1035505 (-) 699 WP_021299253.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41471.57 Da        Isoelectric Point: 9.5552

>NTDB_id=285823 EHF40_RS05520 WP_002984598.1 1030441..1031511(-) (xerS) [Streptococcus pyogenes strain Duke-Large]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=285823 EHF40_RS05520 WP_002984598.1 1030441..1031511(-) (xerS) [Streptococcus pyogenes strain Duke-Large]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTACAAGGCTATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAATTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCCTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGAGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATCTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(177-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0DH45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.618

100

0.806