Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EGM66_RS19015 Genome accession   NZ_CP033884
Coordinates   3451374..3451979 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 50579417     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3446374..3456979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGM66_RS18985 (EGM66_19005) rsmS 3447076..3447240 (-) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  EGM66_RS18990 (EGM66_19010) priC 3447254..3447781 (-) 528 WP_001522038.1 primosomal replication protein N'' -
  EGM66_RS18995 (EGM66_19015) ybaN 3447851..3448228 (+) 378 WP_001188905.1 DUF454 family protein -
  EGM66_RS19000 (EGM66_19020) apt 3448381..3448932 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  EGM66_RS19005 (EGM66_19025) dnaX 3449061..3450992 (+) 1932 WP_000122011.1 DNA polymerase III subunit gamma/tau -
  EGM66_RS19010 (EGM66_19030) ybaB 3451045..3451374 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EGM66_RS19015 (EGM66_19035) recR 3451374..3451979 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  EGM66_RS19020 (EGM66_19040) htpG 3452089..3453963 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  EGM66_RS19025 (EGM66_19045) adk 3454144..3454788 (+) 645 WP_001220233.1 adenylate kinase -
  EGM66_RS19030 (EGM66_19050) hemH 3454920..3455882 (+) 963 WP_001250117.1 ferrochelatase -
  EGM66_RS19035 (EGM66_19055) aes 3455879..3456839 (-) 961 Protein_3217 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=285758 EGM66_RS19015 WP_001195025.1 3451374..3451979(+) (recR) [Escherichia coli strain 50579417]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=285758 EGM66_RS19015 WP_001195025.1 3451374..3451979(+) (recR) [Escherichia coli strain 50579417]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGCCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment