Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EGM66_RS15945 Genome accession   NZ_CP033884
Coordinates   2800756..2801232 (+) Length   158 a.a.
NCBI ID   WP_001186775.1    Uniprot ID   A7ZVJ5
Organism   Escherichia coli strain 50579417     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2795756..2806232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGM66_RS15920 (EGM66_15920) - 2798796..2798991 (+) 196 Protein_2607 DUF905 family protein -
  EGM66_RS15930 (EGM66_15930) - 2799109..2799927 (+) 819 WP_001234656.1 DUF932 domain-containing protein -
  EGM66_RS15940 (EGM66_15940) - 2800269..2800740 (+) 472 Protein_2609 antirestriction protein -
  EGM66_RS15945 (EGM66_15945) radC 2800756..2801232 (+) 477 WP_001186775.1 RadC family protein Machinery gene
  EGM66_RS15950 (EGM66_15950) - 2801295..2801516 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  EGM66_RS15955 (EGM66_15955) - 2801679..2802047 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EGM66_RS15960 (EGM66_15960) - 2802137..2802235 (+) 99 Protein_2613 TA system toxin CbtA family protein -
  EGM66_RS15965 (EGM66_15965) mtnK 2802974..2804233 (+) 1260 WP_000132327.1 S-methyl-5-thioribose kinase -
  EGM66_RS15970 (EGM66_15970) mtnA 2804243..2805358 (+) 1116 WP_001022014.1 S-methyl-5-thioribose-1-phosphate isomerase -
  EGM66_RS15975 (EGM66_15975) - 2805389..2806030 (+) 642 WP_000439687.1 L-fuculose-phosphate aldolase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.30 Da        Isoelectric Point: 7.1437

>NTDB_id=285749 EGM66_RS15945 WP_001186775.1 2800756..2801232(+) (radC) [Escherichia coli strain 50579417]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=285749 EGM66_RS15945 WP_001186775.1 2800756..2801232(+) (radC) [Escherichia coli strain 50579417]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZVJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399