Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EGM66_RS11740 Genome accession   NZ_CP033884
Coordinates   1934163..1934831 (-) Length   222 a.a.
NCBI ID   WP_001521609.1    Uniprot ID   -
Organism   Escherichia coli strain 50579417     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1929163..1939831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGM66_RS11710 (EGM66_11710) rfaQ 1929341..1930399 (-) 1059 WP_001521608.1 lipopolysaccharide core heptosyltransferase RfaQ -
  EGM66_RS11715 (EGM66_11715) waaA 1930812..1932089 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  EGM66_RS11720 (EGM66_11720) coaD 1932097..1932576 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  EGM66_RS11725 (EGM66_11725) mutM 1932615..1933424 (-) 810 WP_001114542.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  EGM66_RS11730 (EGM66_11730) rpmG 1933522..1933689 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  EGM66_RS11735 (EGM66_11735) rpmB 1933710..1933946 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  EGM66_RS11740 (EGM66_11740) radC 1934163..1934831 (-) 669 WP_001521609.1 DNA repair protein RadC Machinery gene
  EGM66_RS11745 (EGM66_11745) coaBC 1935003..1936223 (+) 1221 WP_000050153.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EGM66_RS11750 (EGM66_11750) dut 1936201..1936659 (+) 459 WP_000976070.1 dUTP diphosphatase -
  EGM66_RS11755 (EGM66_11755) slmA 1936766..1937362 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  EGM66_RS11760 (EGM66_11760) pyrE 1937399..1938040 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  EGM66_RS11765 (EGM66_11765) rph 1938106..1938822 (-) 717 WP_001247093.1 ribonuclease PH -
  EGM66_RS11770 (EGM66_11770) yicC 1938949..1939812 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25304.44 Da        Isoelectric Point: 7.8777

>NTDB_id=285727 EGM66_RS11740 WP_001521609.1 1934163..1934831(-) (radC) [Escherichia coli strain 50579417]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSCVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=285727 EGM66_RS11740 WP_001521609.1 1934163..1934831(-) (radC) [Escherichia coli strain 50579417]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACTGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTTGTGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTAGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAATGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496