Detailed information NTG0285707

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EGM66_RS06705
• Genome accession: NZ_CP033884
• Coordinates: 907384..908376 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 50579417
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 902384..913376

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGM66_RS06680 (EGM66_06685)	ygbN	903039..904403 (+)	1365	WP_024166527.1	GntP family transporter	-
EGM66_RS06685 (EGM66_06690)	-	904442..904678 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
EGM66_RS06690 (EGM66_06695)	-	904689..906116 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
EGM66_RS06695 (EGM66_06700)	-	906116..906709 (-)	594	WP_001521150.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
EGM66_RS06700 (EGM66_06705)	-	906856..907263 (+)	408	WP_001521151.1	MarR family transcriptional regulator	-
EGM66_RS06705 (EGM66_06710)	rpoS	907384..908376 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EGM66_RS06710 (EGM66_06715)	nlpD	908439..909533 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
EGM66_RS06715 (EGM66_06720)	pcm	909718..910344 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EGM66_RS06720 (EGM66_06725)	surE	910338..911099 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
EGM66_RS06725 (EGM66_06730)	truD	911080..912129 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
EGM66_RS06730 (EGM66_06735)	ispF	912126..912605 (-)	480	WP_001521152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EGM66_RS06735 (EGM66_06740)	ispD	912605..913315 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=285707 EGM66_RS06705 WP_000081550.1 907384..908376(-) (rpoS) [Escherichia coli strain 50579417]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=285707 EGM66_RS06705 WP_000081550.1 907384..908376(-) (rpoS) [Escherichia coli strain 50579417]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715