Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EGM66_RS06390 Genome accession   NZ_CP033884
Coordinates   850962..851477 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 50579417     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 845962..856477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGM66_RS06365 (EGM66_06375) ygaZ 846361..847098 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  EGM66_RS06370 (EGM66_06380) ygaH 847088..847423 (+) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  EGM66_RS06375 (EGM66_06385) emrR 847514..848044 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  EGM66_RS06380 (EGM66_06390) emrA 848171..849343 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EGM66_RS06385 (EGM66_06395) emrB 849360..850898 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  EGM66_RS06390 (EGM66_06400) luxS 850962..851477 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  EGM66_RS06395 (EGM66_06405) gshA 851627..853183 (-) 1557 WP_001521120.1 glutamate--cysteine ligase -
  EGM66_RS06400 (EGM66_06410) yqaA 853256..853684 (-) 429 WP_001287454.1 YqaA family protein -
  EGM66_RS06405 (EGM66_06415) yqaB 853681..854247 (-) 567 WP_001521122.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EGM66_RS06440 (EGM66_06450) csrA 855678..855863 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=285704 EGM66_RS06390 WP_001130211.1 850962..851477(-) (luxS) [Escherichia coli strain 50579417]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=285704 EGM66_RS06390 WP_001130211.1 850962..851477(-) (luxS) [Escherichia coli strain 50579417]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment