Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DBR03_RS17335 Genome accession   NZ_CP028589
Coordinates   3112999..3113628 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain WCHEC4533     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3107999..3118628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBR03_RS17320 (DBR03_18165) helD 3108241..3110295 (-) 2055 WP_020232990.1 DNA helicase IV -
  DBR03_RS17325 (DBR03_18170) yccF 3110418..3110864 (+) 447 WP_001261235.1 YccF domain-containing protein -
  DBR03_RS17330 (DBR03_18175) yccS 3110874..3113036 (+) 2163 WP_000875041.1 YccS family putative transporter -
  DBR03_RS17335 (DBR03_18180) sxy/tfoX 3112999..3113628 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  DBR03_RS17340 (DBR03_18185) sulA 3113847..3114356 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  DBR03_RS17345 (DBR03_18195) ompA 3114713..3115765 (+) 1053 WP_000750418.1 porin OmpA -
  DBR03_RS17350 (DBR03_18200) matP 3115840..3116292 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  DBR03_RS17355 (DBR03_18205) ycbZ 3116478..3118238 (+) 1761 WP_029701764.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=285704 DBR03_RS17335 WP_000839153.1 3112999..3113628(-) (sxy/tfoX) [Escherichia coli strain WCHEC4533]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=285704 DBR03_RS17335 WP_000839153.1 3112999..3113628(-) (sxy/tfoX) [Escherichia coli strain WCHEC4533]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment