Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | EGM96_RS05580 | Genome accession | NZ_CP033876 |
| Coordinates | 1166619..1167134 (-) | Length | 171 a.a. |
| NCBI ID | WP_000477151.1 | Uniprot ID | V5VA61 |
| Organism | Acinetobacter baumannii strain WU_164 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1161619..1172134
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGM96_RS05555 (EGM96_05570) | - | 1162166..1163809 (+) | 1644 | WP_000281766.1 | nitrite/sulfite reductase | - |
| EGM96_RS05560 (EGM96_05575) | - | 1163802..1164287 (+) | 486 | WP_031961270.1 | DUF934 domain-containing protein | - |
| EGM96_RS05565 (EGM96_05580) | - | 1164369..1164722 (+) | 354 | WP_000457783.1 | DMT family transporter | - |
| EGM96_RS05570 (EGM96_05585) | - | 1164765..1165208 (-) | 444 | WP_001176580.1 | VOC family protein | - |
| EGM96_RS05575 (EGM96_05590) | - | 1165335..1166510 (-) | 1176 | WP_031961268.1 | thiolase family protein | - |
| EGM96_RS05580 (EGM96_05595) | fimT | 1166619..1167134 (-) | 516 | WP_000477151.1 | GspH/FimT family pseudopilin | Machinery gene |
| EGM96_RS05585 (EGM96_05600) | omp38 | 1167515..1168585 (+) | 1071 | WP_024432916.1 | outer membrane protein Omp38 | - |
| EGM96_RS05590 | - | 1168705..1168848 (-) | 144 | WP_162138624.1 | hypothetical protein | - |
| EGM96_RS05595 (EGM96_05605) | - | 1168867..1170072 (-) | 1206 | WP_031961267.1 | RtcB family protein | - |
| EGM96_RS05600 (EGM96_05610) | - | 1170349..1171809 (-) | 1461 | WP_000004971.1 | amino acid permease | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19606.86 Da Isoelectric Point: 8.8196
>NTDB_id=285653 EGM96_RS05580 WP_000477151.1 1166619..1167134(-) (fimT) [Acinetobacter baumannii strain WU_164]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=285653 EGM96_RS05580 WP_000477151.1 1166619..1167134(-) (fimT) [Acinetobacter baumannii strain WU_164]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.976 |
97.076 |
0.427 |