Detailed information
Bioinformatically predicted
Overview
| Name | comE | Type | Machinery gene |
| Locus tag | EGM96_RS04180 | Genome accession | NZ_CP033876 |
| Coordinates | 893049..893612 (+) | Length | 187 a.a. |
| NCBI ID | WP_031961383.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain WU_164 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 888049..898612
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGM96_RS04170 (EGM96_04185) | - | 888254..888943 (+) | 690 | WP_079281925.1 | pilus assembly PilX family protein | - |
| EGM96_RS04175 (EGM96_04195) | - | 888969..893039 (+) | 4071 | WP_031961384.1 | PilC/PilY family type IV pilus protein | - |
| EGM96_RS04180 (EGM96_04200) | comE | 893049..893612 (+) | 564 | WP_031961383.1 | type IV pilin protein | Machinery gene |
| EGM96_RS04185 (EGM96_04205) | pilE | 893612..894034 (+) | 423 | WP_031961381.1 | type IV pilin protein | Machinery gene |
| EGM96_RS04190 (EGM96_04210) | rpsP | 894181..894432 (+) | 252 | WP_000260334.1 | 30S ribosomal protein S16 | - |
| EGM96_RS04195 (EGM96_04215) | rimM | 894452..895000 (+) | 549 | WP_031961380.1 | ribosome maturation factor RimM | - |
| EGM96_RS04200 (EGM96_04220) | trmD | 895046..895786 (+) | 741 | WP_031961379.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| EGM96_RS04205 (EGM96_04225) | rplS | 895994..896362 (+) | 369 | WP_000014562.1 | 50S ribosomal protein L19 | - |
| EGM96_RS04210 (EGM96_04230) | - | 896416..897357 (-) | 942 | WP_104131029.1 | lipase family alpha/beta hydrolase | - |
| EGM96_RS04215 (EGM96_04235) | - | 897472..898506 (-) | 1035 | WP_001189451.1 | lipase secretion chaperone | - |
Sequence
Protein
Download Length: 187 a.a. Molecular weight: 20604.52 Da Isoelectric Point: 8.3938
>NTDB_id=285647 EGM96_RS04180 WP_031961383.1 893049..893612(+) (comE) [Acinetobacter baumannii strain WU_164]
MLKQRAFTLLELMVTVVIIAILAAIAYPSYTRYIEKKDLAVAKQEAQRIATELERFKAKNFSYKGFDATYLYNAGTVTPY
NATTGTLLLPLDATSTTAKYTLTLLDGTQHLPLSILKGSDGNETADSAKVQGLNWVIIVERAKNNSGEPKQANNYDLLIN
SDGFRCMTKVKNVVSGYTDCGSNSETW
MLKQRAFTLLELMVTVVIIAILAAIAYPSYTRYIEKKDLAVAKQEAQRIATELERFKAKNFSYKGFDATYLYNAGTVTPY
NATTGTLLLPLDATSTTAKYTLTLLDGTQHLPLSILKGSDGNETADSAKVQGLNWVIIVERAKNNSGEPKQANNYDLLIN
SDGFRCMTKVKNVVSGYTDCGSNSETW
Nucleotide
Download Length: 564 bp
>NTDB_id=285647 EGM96_RS04180 WP_031961383.1 893049..893612(+) (comE) [Acinetobacter baumannii strain WU_164]
ATGTTGAAACAACGAGCTTTTACCCTGCTTGAGTTGATGGTCACTGTGGTGATTATTGCGATTTTAGCTGCTATCGCGTA
TCCAAGTTATACGCGATACATTGAAAAAAAAGATCTAGCCGTAGCAAAACAAGAGGCTCAGCGTATTGCTACGGAGTTAG
AGCGTTTTAAAGCTAAAAACTTTAGCTATAAAGGTTTTGATGCGACTTACCTTTATAATGCTGGAACGGTTACTCCTTAT
AATGCAACCACTGGTACTTTATTGTTGCCACTAGATGCTACGTCAACAACTGCCAAGTACACATTGACTCTATTAGATGG
CACTCAACATTTACCTTTATCTATTTTAAAGGGCTCTGATGGTAACGAGACAGCAGATTCTGCGAAAGTCCAAGGTTTAA
ACTGGGTTATTATTGTTGAAAGGGCTAAGAATAATAGTGGTGAACCTAAGCAAGCTAATAACTATGATTTACTTATAAAC
AGCGATGGTTTTCGTTGTATGACAAAAGTTAAAAATGTAGTCAGTGGATATACTGACTGTGGTAGCAATAGTGAGACATG
GTAA
ATGTTGAAACAACGAGCTTTTACCCTGCTTGAGTTGATGGTCACTGTGGTGATTATTGCGATTTTAGCTGCTATCGCGTA
TCCAAGTTATACGCGATACATTGAAAAAAAAGATCTAGCCGTAGCAAAACAAGAGGCTCAGCGTATTGCTACGGAGTTAG
AGCGTTTTAAAGCTAAAAACTTTAGCTATAAAGGTTTTGATGCGACTTACCTTTATAATGCTGGAACGGTTACTCCTTAT
AATGCAACCACTGGTACTTTATTGTTGCCACTAGATGCTACGTCAACAACTGCCAAGTACACATTGACTCTATTAGATGG
CACTCAACATTTACCTTTATCTATTTTAAAGGGCTCTGATGGTAACGAGACAGCAGATTCTGCGAAAGTCCAAGGTTTAA
ACTGGGTTATTATTGTTGAAAGGGCTAAGAATAATAGTGGTGAACCTAAGCAAGCTAATAACTATGATTTACTTATAAAC
AGCGATGGTTTTCGTTGTATGACAAAAGTTAAAAATGTAGTCAGTGGATATACTGACTGTGGTAGCAATAGTGAGACATG
GTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE | Acinetobacter baylyi ADP1 |
43.85 |
100 |
0.439 |