Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   DBQ26_RS18120 Genome accession   NZ_CP028574
Coordinates   3425047..3425373 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain WCHAP005046     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3420047..3430373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBQ26_RS18100 (DBQ26_18100) - 3420155..3420781 (-) 627 WP_032006822.1 FHA domain-containing protein -
  DBQ26_RS18105 (DBQ26_18105) gspD 3420822..3423092 (-) 2271 WP_014208195.1 type II secretion system secretin GspD -
  DBQ26_RS18110 (DBQ26_18110) - 3423134..3423970 (-) 837 WP_032006823.1 type II secretion system protein N -
  DBQ26_RS18115 (DBQ26_18115) gspN 3423970..3424713 (-) 744 WP_016144128.1 type II secretion system protein N -
  DBQ26_RS18120 (DBQ26_18120) hns 3425047..3425373 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  DBQ26_RS18125 (DBQ26_18125) - 3425568..3425684 (-) 117 Protein_3286 acyl-CoA thioesterase -
  DBQ26_RS18130 (DBQ26_18130) - 3425694..3426662 (-) 969 WP_005804963.1 IS30 family transposase -
  DBQ26_RS18135 (DBQ26_18135) - 3426775..3427098 (-) 324 Protein_3288 acyl-CoA thioesterase -
  DBQ26_RS18140 (DBQ26_18140) - 3427106..3428299 (-) 1194 WP_032006826.1 membrane protein -
  DBQ26_RS18145 (DBQ26_18145) - 3428309..3429151 (-) 843 WP_032006827.1 hypothetical protein -
  DBQ26_RS18150 (DBQ26_18150) hemD 3429160..3429927 (-) 768 WP_057089982.1 uroporphyrinogen-III synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=285601 DBQ26_RS18120 WP_000801427.1 3425047..3425373(-) (hns) [Acinetobacter pittii strain WCHAP005046]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=285601 DBQ26_RS18120 WP_000801427.1 3425047..3425373(-) (hns) [Acinetobacter pittii strain WCHAP005046]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterProScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment