Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   DBQ26_RS02450 Genome accession   NZ_CP028574
Coordinates   238725..239609 (+) Length   294 a.a.
NCBI ID   WP_017481657.1    Uniprot ID   A0AAN4S7G5
Organism   Acinetobacter pittii strain WCHAP005046     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 233725..244609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBQ26_RS02425 (DBQ26_02430) - 234039..235286 (-) 1248 WP_002119535.1 YihY family inner membrane protein -
  DBQ26_RS02430 (DBQ26_02435) wrbA 235647..236249 (+) 603 WP_005078299.1 NAD(P)H:quinone oxidoreductase -
  DBQ26_RS02435 (DBQ26_02440) xpt 236301..236876 (-) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  DBQ26_RS02440 (DBQ26_02445) - 236949..237662 (-) 714 WP_017481658.1 DUF3108 domain-containing protein -
  DBQ26_RS02445 (DBQ26_02450) - 237821..238492 (-) 672 WP_014207723.1 hypothetical protein -
  DBQ26_RS02450 (DBQ26_02455) tonB2 238725..239609 (+) 885 WP_017481657.1 energy transducer TonB Machinery gene
  DBQ26_RS02455 (DBQ26_02460) ybeY 239661..240137 (-) 477 WP_017481656.1 rRNA maturation RNase YbeY -
  DBQ26_RS02460 (DBQ26_02465) phoL 240147..241235 (-) 1089 WP_002119513.1 PhoH family protein -
  DBQ26_RS02465 (DBQ26_02470) miaB 241273..242724 (-) 1452 WP_002119558.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33682.31 Da        Isoelectric Point: 7.6439

>NTDB_id=285579 DBQ26_RS02450 WP_017481657.1 238725..239609(+) (tonB2) [Acinetobacter pittii strain WCHAP005046]
MLNKRSLSIEPFHHWWQDRVFIAATILAILLHIFVLLIHFAMPSPLEQSTKEIAISIRPSNEPVHQADFLAQADQQGAGA
FREAHRTSSDTPNPMLNDASTGNTELESLQKIQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKEASAIYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=285579 DBQ26_RS02450 WP_017481657.1 238725..239609(+) (tonB2) [Acinetobacter pittii strain WCHAP005046]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATCATTGGTGGCAAGACCGAGTCTTTATTGCCGCAACAATATT
GGCAATCTTACTGCATATTTTTGTATTGCTCATTCACTTTGCCATGCCTAGCCCCTTAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAGCAATGAGCCAGTTCACCAAGCAGATTTTTTAGCGCAAGCAGATCAGCAAGGTGCGGGCGCA
TTTCGTGAAGCTCATCGGACTTCTAGTGATACTCCAAATCCGATGCTCAATGATGCTTCAACTGGAAATACTGAGTTAGA
AAGTTTGCAAAAGATACAGCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAGAAAC
AAGCGGATGCAAGCCAAAGAAAAAAAGAACTAGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCCATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAACAAGATTTCAGCCGTCAGCAAAAAATAAAGACAGTAGACGGAATTCAAGCGAA
GAAAGAGGCTTCAGCTATTTATTTAGATAAATTTCGTGAAAAAGTAGAGCTTTACGGTAATCGCTATTACCCTGAAGAAG
CCAAACAGCAACAGCTAAGAGGTGAAGTGCGTTTAATGGTTATTTTGAATGCTCAAGGCGGAATTCGTGCAATCCGACTG
CTTGAAAGCTCAGGGCATTCAATACTAGATGAAGCAGCTAAGTCTTCAGTACGTCGCGGTGCACCATTTGGGCATTTTGA
TGCGAATATGAAAGATATTTCGGAGTTGCGTATTGTACGTACTTGGCGTTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

87.415

100

0.874

Multiple sequence alignment