Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   CDG55_RS13200 Genome accession   NZ_CP028561
Coordinates   2441856..2444096 (+) Length   746 a.a.
NCBI ID   WP_087536933.1    Uniprot ID   A0A2R4TNQ9
Organism   Acinetobacter sp. WCHA45     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2436856..2449096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG55_RS13180 (CDG55_13170) lnt 2437688..2439247 (+) 1560 WP_087536924.1 apolipoprotein N-acyltransferase -
  CDG55_RS13185 (CDG55_13175) - 2439304..2439648 (-) 345 WP_087536923.1 hypothetical protein -
  CDG55_RS13190 (CDG55_13180) gspG 2439911..2440480 (-) 570 WP_087536922.1 type II secretion system major pseudopilin GspG -
  CDG55_RS13195 (CDG55_13185) gspF 2440504..2441709 (-) 1206 WP_087536921.1 type II secretion system inner membrane protein GspF -
  CDG55_RS13200 (CDG55_13190) priA 2441856..2444096 (+) 2241 WP_087536933.1 primosomal protein N' Machinery gene
  CDG55_RS13205 (CDG55_13195) - 2444232..2446346 (+) 2115 WP_087536920.1 TonB-dependent siderophore receptor -
  CDG55_RS13210 (CDG55_13200) - 2446655..2448472 (+) 1818 WP_087536919.1 cation:proton antiporter -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 84693.67 Da        Isoelectric Point: 8.5631

>NTDB_id=285523 CDG55_RS13200 WP_087536933.1 2441856..2444096(+) (priA) [Acinetobacter sp. WCHA45]
MNEAYMPTENSNAILYRIRVAIPVYVYDTFDYTVSAEQYAQAQIGARVAISFGRQNLVGIITEKVDPNEAFTGQFKLKPI
TELLDQESILDQQVLTLLTWSAQYYQFPIGEVMQSALPTLLRQGRALDILFHLWKIIPHNDPNALLKRSQKQYDAYQVLK
LHPHGATENILNLSGVETSTLKALEKKGLVECCLEPHDFTPTPVQLAQVPLTPNEDQKKAIQQILKAQHHYQAFLLDGLT
GSGKTEVYLQVMHEVLKQGKQVLVLVPEIGLTPQTVARFKSRFHCDVALLHSGLNDSKRLQAWQHAQTGKASIIIGTRSA
IYTPLPHLGLIILDEEHDLSFKQQEGFRYHTRDVALYRGHLQNCPVILGSATPSIDSYHLVESGKLHLLELNQRAGIAVL
PKMYVVDLKVAKKKHGLSQTLIEQIKHTLERKEQVLIFLNRRGYAPILMCESCGWQANCPHCDAHFTLHSQPYHHLHCHH
CGTINRLPDHCPACQKQSLKTIGAGTAKLEEHVQELFPHHEVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKG
HHFPHVTLVAILDIDAGLLSVDPRAPERTAQLIVQVAGRAGRGEHKGSVYLQSLRPDHPMLTTLIEHDYRTVAKQMLADR
KIALLPPYRYAVLVRVESKDRDYSQQFLADIAQQLRTMAGDLVDIWGPIPAPMERKAGRYRAHMVILSTDRAKLHFYLRQ
WWQQVVHLPRQHLLRLSIDVDPQEFS

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=285523 CDG55_RS13200 WP_087536933.1 2441856..2444096(+) (priA) [Acinetobacter sp. WCHA45]
ATGAATGAAGCCTATATGCCTACCGAAAATTCTAACGCGATTCTGTACCGTATTCGAGTTGCAATACCCGTTTATGTTTA
CGACACGTTTGACTACACGGTCAGCGCTGAACAATACGCACAAGCTCAAATCGGTGCACGTGTCGCGATTTCTTTTGGAC
GGCAAAATCTCGTGGGAATCATTACGGAGAAAGTTGATCCAAACGAAGCATTTACAGGGCAATTCAAACTTAAACCCATC
ACAGAATTACTCGATCAGGAATCGATTTTAGACCAACAAGTTTTAACTTTGTTGACATGGTCAGCCCAATATTACCAATT
CCCGATTGGTGAAGTGATGCAAAGTGCCCTGCCTACTTTATTAAGACAAGGTCGCGCCTTAGACATTCTGTTTCATTTAT
GGAAAATCATCCCTCACAATGACCCGAATGCCTTATTAAAACGCTCTCAAAAACAGTATGATGCCTATCAGGTGTTAAAA
CTTCATCCACATGGAGCTACCGAGAATATACTTAACCTGAGTGGTGTAGAAACCTCAACTTTAAAGGCATTAGAAAAAAA
GGGCTTGGTTGAATGCTGCCTAGAACCGCATGATTTCACCCCTACACCTGTACAATTGGCTCAAGTGCCTTTAACACCGA
ACGAAGATCAAAAGAAAGCCATTCAACAGATCCTCAAAGCACAACATCACTATCAGGCATTTTTACTCGATGGTTTGACT
GGCAGTGGTAAAACTGAAGTTTATTTGCAAGTCATGCATGAGGTGTTAAAACAAGGCAAACAAGTATTGGTACTGGTGCC
TGAAATTGGCCTAACCCCGCAAACGGTCGCTCGTTTTAAGTCACGGTTTCATTGCGATGTGGCTTTACTGCACTCAGGTT
TAAATGACTCAAAACGTTTACAGGCATGGCAACATGCACAAACGGGCAAAGCTTCCATTATTATTGGCACACGTTCAGCA
ATCTATACCCCACTGCCGCATTTGGGCTTAATCATTCTAGATGAGGAACATGATCTTTCCTTTAAGCAGCAAGAAGGTTT
CCGCTATCATACCCGTGATGTCGCGTTGTATCGTGGCCATTTGCAAAACTGCCCTGTCATTCTCGGTTCAGCCACCCCAA
GTATTGACAGTTATCACTTGGTGGAATCGGGCAAGTTACATTTGCTTGAGTTGAATCAGCGTGCGGGCATCGCTGTACTG
CCGAAAATGTATGTGGTGGATTTAAAAGTCGCAAAAAAGAAGCATGGTCTCAGCCAAACCTTGATCGAACAGATTAAGCA
TACTTTAGAGCGTAAAGAGCAGGTGCTGATCTTTTTAAATCGACGTGGTTATGCGCCGATCCTGATGTGTGAAAGCTGTG
GTTGGCAAGCCAACTGTCCACATTGTGATGCGCATTTTACTTTGCATTCACAGCCCTACCATCATTTGCATTGTCATCAT
TGCGGCACCATCAATCGTCTGCCTGATCATTGTCCTGCATGTCAGAAACAAAGCTTAAAAACGATTGGGGCAGGAACAGC
AAAACTTGAAGAACATGTACAGGAGCTTTTTCCACATCATGAAGTGATTCGGGTCGATCGTGACAGCACCAGTCGAGTCG
GTAGCTGGCAAAAAATCTATGATCGCATTCAGCAAAATAAACCGAGCATTTTGTTGGGCACTCAAATGCTGGCCAAAGGC
CATCATTTTCCGCATGTTACCCTTGTTGCGATTTTAGATATTGATGCAGGACTGCTCAGTGTTGACCCACGTGCACCTGA
ACGAACTGCACAGCTGATTGTGCAAGTCGCTGGCCGTGCTGGTCGTGGTGAGCATAAAGGCAGTGTTTATTTGCAAAGTT
TGCGTCCAGATCATCCGATGCTGACCACATTGATTGAACATGATTATCGTACTGTCGCCAAACAAATGCTGGCTGATCGC
AAAATTGCCCTGCTACCACCTTATCGTTATGCAGTATTGGTTCGGGTTGAATCTAAAGACAGAGATTATAGCCAACAATT
CTTGGCAGATATTGCACAACAATTACGTACAATGGCTGGAGATTTAGTTGATATTTGGGGGCCCATTCCCGCACCGATGG
AACGTAAAGCTGGTCGTTATCGGGCGCATATGGTGATTTTATCCACTGATCGCGCCAAACTGCACTTTTATTTACGTCAA
TGGTGGCAACAAGTGGTACATTTACCGCGTCAGCATCTGCTCAGACTCTCGATTGACGTTGATCCACAAGAGTTTAGTTA
A

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(19-118)

Primosomal protein N C-terminal domain (PriA_C)

(647-742)

DEAD/DEAH box helicase (DEAD)

(215-376)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R4TNQ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

81.732

99.062

0.81

Multiple sequence alignment