Detailed information NTG0285516

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: CDG55_RS08115
• Genome accession: NZ_CP028561
• Coordinates: 1392437..1393066 (+)
• Length: 209 a.a.
• NCBI ID: WP_042862502.1
• Uniprot ID: A0A2R4TNJ4
• Organism: Acinetobacter sp. WCHA45
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1387437..1398066

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CDG55_RS08080 (CDG55_08075)	kdsB	1387630..1388391 (+)	762	WP_087535848.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
CDG55_RS08085 (CDG55_08080)	-	1388394..1389377 (+)	984	WP_087535847.1	DNA polymerase III subunit delta'	-
CDG55_RS08090 (CDG55_08085)	-	1389717..1390061 (+)	345	WP_005159897.1	PilZ domain-containing protein	-
CDG55_RS08095 (CDG55_08090)	-	1390079..1390852 (+)	774	WP_087535846.1	TatD family hydrolase	-
CDG55_RS08100 (CDG55_08095)	-	1390893..1391504 (+)	612	WP_034601445.1	TetR/AcrR family transcriptional regulator	-
CDG55_RS08105 (CDG55_08100)	-	1391513..1392064 (+)	552	WP_087535845.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
CDG55_RS08110 (CDG55_08105)	xcpV	1392051..1392437 (+)	387	WP_087535844.1	type II secretion system minor pseudopilin GspI	Machinery gene
CDG55_RS08115 (CDG55_08110)	xcpW	1392437..1393066 (+)	630	WP_042862502.1	type II secretion system minor pseudopilin GspJ	Machinery gene
CDG55_RS08120 (CDG55_08115)	gspK	1393063..1394019 (+)	957	WP_087535843.1	type II secretion system minor pseudopilin GspK	-
CDG55_RS08125 (CDG55_08120)	-	1394130..1394726 (+)	597	WP_087535842.1	6-pyruvoyl trahydropterin synthase family protein	-
CDG55_RS08130 (CDG55_08125)	ung	1394772..1395485 (+)	714	WP_050040245.1	uracil-DNA glycosylase	-
CDG55_RS08135 (CDG55_08130)	-	1395482..1396606 (+)	1125	WP_171287548.1	enoyl-CoA hydratase/isomerase family protein	-
CDG55_RS08140 (CDG55_08135)	tadA	1396612..1397136 (+)	525	WP_005159927.1	tRNA adenosine(34) deaminase TadA	-
CDG55_RS08145 (CDG55_08140)	-	1397203..1397643 (+)	441	WP_005159930.1	SRPBCC family protein	-

Sequence

Protein

• Length: 209 a.a.
• Molecular weight: 23848.58 Da
• Isoelectric Point: 9.0640

>NTDB_id=285516 CDG55_RS08115 WP_042862502.1 1392437..1393066(+) (xcpW) [Acinetobacter sp. WCHA45]
MKIKKGFTLVELLVAIAIFAVLSMLGWKVFDYLLKVKDRNAEHETHLFALQDAYQQILRDSLQIIPLTANDGRQLQAALV
LNDRGFMFSKAGVSDPLKQGLSPYERIEYRYDSTQKKVYRLKYSNLNIPNRVQPISSTLLENVDQFKVIVMNPQELTQWP
ENIGDPNNINELKKLPLGIKIQLSVAGTDYEWIYSLLNANQLLGNNSPP

Nucleotide

• Length: 630 bp

>NTDB_id=285516 CDG55_RS08115 WP_042862502.1 1392437..1393066(+) (xcpW) [Acinetobacter sp. WCHA45]
ATGAAAATTAAAAAGGGTTTTACCCTTGTTGAATTGCTGGTTGCAATTGCTATTTTTGCCGTACTTTCAATGCTTGGTTG
GAAAGTTTTTGATTATTTATTAAAAGTCAAAGATCGTAATGCAGAGCATGAAACACATTTATTTGCGTTACAAGATGCCT
ATCAGCAGATTCTAAGAGATAGCCTGCAAATTATTCCATTAACGGCAAATGATGGTCGACAATTACAAGCCGCTTTGGTG
CTAAATGATCGTGGTTTTATGTTTAGTAAAGCAGGGGTGTCCGATCCGTTGAAACAAGGTTTGTCACCTTATGAACGTAT
TGAATATCGCTACGATTCAACACAGAAAAAAGTTTATCGACTCAAATATTCAAATCTAAATATTCCAAATCGGGTACAAC
CCATCTCAAGTACCTTATTAGAAAATGTAGATCAATTTAAAGTAATCGTGATGAATCCACAGGAACTGACACAATGGCCT
GAAAATATTGGTGATCCTAATAATATTAATGAGTTAAAAAAATTACCATTAGGCATAAAAATACAGCTTAGTGTTGCAGG
CACGGATTACGAGTGGATTTATAGTCTACTGAATGCAAATCAATTGTTGGGAAATAACTCACCACCATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (59-188)

• Prokaryotic N-terminal methylation motif (N_methyl) (1-25)

3D structure

• AlphaFold DB: A0A2R4TNJ4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	74.346	91.388	0.679