Detailed information
Bioinformatically predicted
Overview
| Name | rpoN/rpoN1 | Type | Machinery gene |
| Locus tag | PSPA7_RS23995 | Genome accession | NC_009656 |
| Coordinates | 5187742..5189235 (+) | Length | 497 a.a. |
| NCBI ID | WP_003155095.1 | Uniprot ID | - |
| Organism | Pseudomonas paraeruginosa PA7 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 5186790..5220442 | 5187742..5189235 | within | 0 |
Gene organization within MGE regions
Location: 5186790..5220442
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSPA7_RS23990 (PSPA7_5034) | lptB | 5186790..5187515 (+) | 726 | WP_012077215.1 | LPS export ABC transporter ATP-binding protein | - |
| PSPA7_RS23995 (PSPA7_5035) | rpoN/rpoN1 | 5187742..5189235 (+) | 1494 | WP_003155095.1 | RNA polymerase factor sigma-54 | Machinery gene |
| PSPA7_RS24000 (PSPA7_5036) | hpf | 5189313..5189621 (+) | 309 | WP_003155096.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| PSPA7_RS24005 (PSPA7_5037) | ptsN | 5189635..5190099 (+) | 465 | WP_003155098.1 | PTS IIA-like nitrogen regulatory protein PtsN | - |
| PSPA7_RS24010 (PSPA7_5038) | rapZ | 5190101..5190961 (+) | 861 | WP_003155100.1 | RNase adapter RapZ | - |
| PSPA7_RS24015 (PSPA7_5039) | - | 5190991..5191263 (+) | 273 | WP_003155102.1 | HPr family phosphocarrier protein | - |
| PSPA7_RS24020 (PSPA7_5040) | - | 5191294..5192409 (-) | 1116 | WP_012077216.1 | tyrosine-type recombinase/integrase | - |
| PSPA7_RS24025 (PSPA7_5041) | - | 5192414..5192650 (-) | 237 | WP_012077217.1 | helix-turn-helix domain-containing protein | - |
| PSPA7_RS24030 (PSPA7_5042) | - | 5192745..5192975 (+) | 231 | WP_012077218.1 | hypothetical protein | - |
| PSPA7_RS24035 (PSPA7_5043) | - | 5192986..5195679 (+) | 2694 | WP_012077219.1 | toprim domain-containing protein | - |
| PSPA7_RS24040 (PSPA7_5044) | - | 5196110..5196310 (+) | 201 | WP_012074157.1 | hypothetical protein | - |
| PSPA7_RS24045 (PSPA7_5045) | - | 5196282..5196683 (+) | 402 | WP_012077220.1 | hypothetical protein | - |
| PSPA7_RS24050 (PSPA7_5046) | - | 5196699..5197055 (+) | 357 | WP_012074155.1 | hypothetical protein | - |
| PSPA7_RS32540 (PSPA7_6451) | - | 5197123..5197536 (+) | 414 | WP_025297579.1 | hypothetical protein | - |
| PSPA7_RS24060 (PSPA7_5047) | - | 5197523..5197738 (+) | 216 | WP_012074154.1 | hypothetical protein | - |
| PSPA7_RS31515 (PSPA7_5048) | - | 5197735..5197965 (+) | 231 | WP_012074153.1 | hypothetical protein | - |
| PSPA7_RS24065 (PSPA7_5049) | - | 5197962..5198243 (+) | 282 | WP_012074152.1 | hypothetical protein | - |
| PSPA7_RS32545 (PSPA7_5050) | - | 5198602..5198811 (+) | 210 | WP_012074151.1 | hypothetical protein | - |
| PSPA7_RS24075 (PSPA7_6452) | - | 5198787..5199047 (-) | 261 | WP_023122741.1 | ogr/Delta-like zinc finger family protein | - |
| PSPA7_RS24080 (PSPA7_5051) | - | 5199093..5199947 (-) | 855 | WP_034019547.1 | phage portal protein | - |
| PSPA7_RS24085 (PSPA7_5052) | - | 5199859..5201907 (-) | 2049 | WP_012074149.1 | terminase large subunit domain-containing protein | - |
| PSPA7_RS24090 (PSPA7_5053) | - | 5202065..5203018 (+) | 954 | WP_034019549.1 | GPO family capsid scaffolding protein | - |
| PSPA7_RS24095 (PSPA7_5054) | - | 5203018..5204040 (+) | 1023 | WP_012074147.1 | phage major capsid protein, P2 family | - |
| PSPA7_RS24100 (PSPA7_5055) | gpM | 5204037..5204774 (+) | 738 | WP_012077221.1 | phage terminase small subunit | - |
| PSPA7_RS24105 (PSPA7_5056) | - | 5204872..5205333 (+) | 462 | WP_012077222.1 | head completion/stabilization protein | - |
| PSPA7_RS24110 (PSPA7_5057) | - | 5205335..5205772 (+) | 438 | WP_012077223.1 | phage tail protein | - |
| PSPA7_RS24115 (PSPA7_5058) | - | 5205765..5206430 (+) | 666 | WP_012077224.1 | virion morphogenesis protein | - |
| PSPA7_RS24120 (PSPA7_5059) | - | 5206442..5207557 (+) | 1116 | WP_012074142.1 | DUF2586 domain-containing protein | - |
| PSPA7_RS24125 (PSPA7_5060) | - | 5207561..5208010 (+) | 450 | WP_012074141.1 | DUF2597 family protein | - |
| PSPA7_RS24130 (PSPA7_5061) | - | 5208010..5208219 (+) | 210 | WP_012074140.1 | TraR/DksA family transcriptional regulator | - |
| PSPA7_RS24135 (PSPA7_5062) | - | 5208219..5208524 (+) | 306 | WP_025297585.1 | hypothetical protein | - |
| PSPA7_RS24140 (PSPA7_5063) | - | 5208521..5208982 (+) | 462 | WP_012074138.1 | lysozyme | - |
| PSPA7_RS24145 (PSPA7_5064) | - | 5208979..5209464 (+) | 486 | WP_012074137.1 | lysis system i-spanin subunit Rz | - |
| PSPA7_RS24150 (PSPA7_5065) | - | 5209461..5209748 (+) | 288 | WP_012074136.1 | putative phage tail assembly chaperone | - |
| PSPA7_RS32550 | - | 5209772..5209912 (+) | 141 | WP_012074135.1 | DUF6890 family protein | - |
| PSPA7_RS24160 (PSPA7_5067) | - | 5209927..5211981 (+) | 2055 | WP_012074134.1 | phage tail tape measure protein | - |
| PSPA7_RS24165 (PSPA7_5068) | - | 5211978..5212298 (+) | 321 | WP_012074133.1 | DUF2590 family protein | - |
| PSPA7_RS24170 (PSPA7_5069) | - | 5212295..5213467 (+) | 1173 | WP_012074132.1 | baseplate J/gp47 family protein | - |
| PSPA7_RS24175 (PSPA7_5070) | - | 5213460..5213984 (+) | 525 | WP_012074131.1 | phage tail protein | - |
| PSPA7_RS24180 (PSPA7_5071) | - | 5213996..5215960 (+) | 1965 | WP_012077225.1 | phage tail protein | - |
| PSPA7_RS24185 (PSPA7_5072) | - | 5215974..5216684 (+) | 711 | WP_012074129.1 | hypothetical protein | - |
| PSPA7_RS24190 (PSPA7_5073) | - | 5216681..5217601 (+) | 921 | WP_012074128.1 | hypothetical protein | - |
| PSPA7_RS24195 (PSPA7_5074) | - | 5217598..5218137 (+) | 540 | WP_012077226.1 | hypothetical protein | - |
| PSPA7_RS24200 (PSPA7_5075) | - | 5218137..5218829 (+) | 693 | WP_012077227.1 | hypothetical protein | - |
| PSPA7_RS24205 (PSPA7_5076) | - | 5218814..5219785 (+) | 972 | WP_012077228.1 | hypothetical protein | - |
| PSPA7_RS24210 (PSPA7_5077) | - | 5219828..5220232 (-) | 405 | WP_012077229.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| PSPA7_RS31520 (PSPA7_5078) | - | 5220260..5220442 (-) | 183 | WP_071534354.1 | type II toxin-antitoxin system HicA family toxin | - |
Sequence
Protein
Download Length: 497 a.a. Molecular weight: 55967.18 Da Isoelectric Point: 4.4128
>NTDB_id=28550 PSPA7_RS23995 WP_003155095.1 5187742..5189235(+) (rpoN/rpoN1) [Pseudomonas paraeruginosa PA7]
MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGDDFDGSDPLADGAEQATSAPQESALQE
STTPSVESLDDDQWSERIPSELPVDTAWEDIYQTSASSLPSSDDDEWDFTARTSNGESLHSHLLWQVNLAPMSDTDRMIA
VTIIDSINNDGYLEESLEEILAALDPELDVELDEVEVVLRRIQQLEPAGIGARNLRECLLLQLRQLPPATPWLDEALRLV
SDYLDLLGGRDYGQLMRRMKLKEDELRLVIELIQCLHPRPGSQIESSEAEYIVPDVIVRKDNERWLVELNQEAMPRLRVN
ATYAGMVRRADSSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIVEHQRGFLDYGEEAMKPLVLHDIAEAVGMHEST
ISRVTTQKYMHTPRGIFELKYFFSSHVSTAEGGECSSTAIRAIIKKLVAAENAKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLV
MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGDDFDGSDPLADGAEQATSAPQESALQE
STTPSVESLDDDQWSERIPSELPVDTAWEDIYQTSASSLPSSDDDEWDFTARTSNGESLHSHLLWQVNLAPMSDTDRMIA
VTIIDSINNDGYLEESLEEILAALDPELDVELDEVEVVLRRIQQLEPAGIGARNLRECLLLQLRQLPPATPWLDEALRLV
SDYLDLLGGRDYGQLMRRMKLKEDELRLVIELIQCLHPRPGSQIESSEAEYIVPDVIVRKDNERWLVELNQEAMPRLRVN
ATYAGMVRRADSSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIVEHQRGFLDYGEEAMKPLVLHDIAEAVGMHEST
ISRVTTQKYMHTPRGIFELKYFFSSHVSTAEGGECSSTAIRAIIKKLVAAENAKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLV
Nucleotide
Download Length: 1494 bp
>NTDB_id=28550 PSPA7_RS23995 WP_003155095.1 5187742..5189235(+) (rpoN/rpoN1) [Pseudomonas paraeruginosa PA7]
ATGAAACCATCGCTAGTCCTCAAGATGGGCCAGCAGCTGACGATGACGCCTCAGCTGCAACAGGCCATACGCCTCCTCCA
GCTCTCCACCCTGGACCTCCAGCAGGAAATCCAGGAAGCGCTGGAATCCAATCCCATGCTCGAACGCCAGGAAGACGGCG
ACGATTTCGACGGCAGCGACCCGCTCGCCGATGGCGCCGAACAGGCAACCAGCGCGCCGCAGGAGAGCGCCCTCCAGGAA
AGCACCACACCCAGCGTAGAAAGCCTCGACGACGACCAGTGGAGCGAGCGCATCCCCAGCGAACTGCCGGTGGATACCGC
CTGGGAGGACATCTACCAGACCAGCGCCAGCAGCCTGCCCAGCAGCGACGACGACGAATGGGACTTCACCGCGCGCACCA
GCAACGGCGAGAGCCTGCACAGCCACCTGCTCTGGCAGGTGAACCTGGCGCCGATGTCGGACACCGACCGCATGATCGCG
GTGACCATCATCGACAGCATCAACAATGACGGCTATCTGGAGGAGTCCCTCGAGGAGATCCTCGCCGCCCTCGATCCGGA
GCTGGACGTCGAGCTCGACGAAGTCGAAGTCGTGCTGCGCCGCATCCAGCAGCTGGAGCCCGCCGGCATCGGCGCTCGCA
ACCTGCGCGAGTGCCTGTTGCTGCAACTGCGCCAGCTGCCACCCGCCACGCCCTGGCTGGACGAAGCCCTGCGCCTGGTT
TCCGACTACCTCGACCTGCTCGGCGGCCGCGACTACGGCCAGTTGATGCGGCGCATGAAGCTCAAGGAAGACGAGTTGCG
CCTGGTCATCGAGCTGATCCAGTGCCTGCATCCACGGCCCGGCTCGCAGATCGAGTCGAGCGAGGCCGAATACATCGTCC
CGGACGTCATCGTGCGCAAGGACAACGAGCGCTGGCTGGTGGAACTGAACCAGGAGGCGATGCCACGCCTGCGTGTCAAC
GCCACCTATGCCGGCATGGTCCGCCGTGCCGACAGCAGTGCCGACAATACCTTCATGCGCAACCAGTTGCAGGAAGCGCG
CTGGTTCATCAAGAGCCTGCAGAGCCGCAACGAGACGCTGATGAAGGTGGCGACGCAGATCGTCGAACACCAGCGTGGCT
TCCTCGACTACGGCGAGGAAGCCATGAAGCCGCTGGTCCTGCACGACATCGCCGAAGCGGTGGGTATGCACGAGTCGACC
ATTTCGCGGGTCACCACGCAGAAATATATGCATACGCCGCGCGGTATTTTCGAGCTGAAATATTTCTTTTCAAGTCACGT
CAGTACCGCCGAAGGCGGGGAATGCTCGTCCACCGCGATCCGCGCGATCATCAAGAAACTGGTGGCCGCGGAAAATGCGA
AAAAGCCATTGAGCGACAGCAAGATCGCTGGTTTACTGGAGGCACAGGGCATTCAAGTGGCTCGCCGCACCGTCGCCAAG
TACCGCGAATCCCTGGGCATAGCCCCTTCGAGCGAGCGCAAGCGACTGGTGTGA
ATGAAACCATCGCTAGTCCTCAAGATGGGCCAGCAGCTGACGATGACGCCTCAGCTGCAACAGGCCATACGCCTCCTCCA
GCTCTCCACCCTGGACCTCCAGCAGGAAATCCAGGAAGCGCTGGAATCCAATCCCATGCTCGAACGCCAGGAAGACGGCG
ACGATTTCGACGGCAGCGACCCGCTCGCCGATGGCGCCGAACAGGCAACCAGCGCGCCGCAGGAGAGCGCCCTCCAGGAA
AGCACCACACCCAGCGTAGAAAGCCTCGACGACGACCAGTGGAGCGAGCGCATCCCCAGCGAACTGCCGGTGGATACCGC
CTGGGAGGACATCTACCAGACCAGCGCCAGCAGCCTGCCCAGCAGCGACGACGACGAATGGGACTTCACCGCGCGCACCA
GCAACGGCGAGAGCCTGCACAGCCACCTGCTCTGGCAGGTGAACCTGGCGCCGATGTCGGACACCGACCGCATGATCGCG
GTGACCATCATCGACAGCATCAACAATGACGGCTATCTGGAGGAGTCCCTCGAGGAGATCCTCGCCGCCCTCGATCCGGA
GCTGGACGTCGAGCTCGACGAAGTCGAAGTCGTGCTGCGCCGCATCCAGCAGCTGGAGCCCGCCGGCATCGGCGCTCGCA
ACCTGCGCGAGTGCCTGTTGCTGCAACTGCGCCAGCTGCCACCCGCCACGCCCTGGCTGGACGAAGCCCTGCGCCTGGTT
TCCGACTACCTCGACCTGCTCGGCGGCCGCGACTACGGCCAGTTGATGCGGCGCATGAAGCTCAAGGAAGACGAGTTGCG
CCTGGTCATCGAGCTGATCCAGTGCCTGCATCCACGGCCCGGCTCGCAGATCGAGTCGAGCGAGGCCGAATACATCGTCC
CGGACGTCATCGTGCGCAAGGACAACGAGCGCTGGCTGGTGGAACTGAACCAGGAGGCGATGCCACGCCTGCGTGTCAAC
GCCACCTATGCCGGCATGGTCCGCCGTGCCGACAGCAGTGCCGACAATACCTTCATGCGCAACCAGTTGCAGGAAGCGCG
CTGGTTCATCAAGAGCCTGCAGAGCCGCAACGAGACGCTGATGAAGGTGGCGACGCAGATCGTCGAACACCAGCGTGGCT
TCCTCGACTACGGCGAGGAAGCCATGAAGCCGCTGGTCCTGCACGACATCGCCGAAGCGGTGGGTATGCACGAGTCGACC
ATTTCGCGGGTCACCACGCAGAAATATATGCATACGCCGCGCGGTATTTTCGAGCTGAAATATTTCTTTTCAAGTCACGT
CAGTACCGCCGAAGGCGGGGAATGCTCGTCCACCGCGATCCGCGCGATCATCAAGAAACTGGTGGCCGCGGAAAATGCGA
AAAAGCCATTGAGCGACAGCAAGATCGCTGGTTTACTGGAGGCACAGGGCATTCAAGTGGCTCGCCGCACCGTCGCCAAG
TACCGCGAATCCCTGGGCATAGCCCCTTCGAGCGAGCGCAAGCGACTGGTGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoN/rpoN1 | Ralstonia pseudosolanacearum GMI1000 |
45.785 |
100 |
0.481 |