Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DBP88_RS10320 Genome accession   NZ_CP028538
Coordinates   1712442..1713068 (+) Length   208 a.a.
NCBI ID   WP_023299743.1    Uniprot ID   A0A9X7L0J6
Organism   Enterobacter hormaechei strain SCEH020042     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1707442..1718068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBP88_RS10300 (DBP88_10385) - 1707841..1709601 (-) 1761 WP_023305819.1 Lon protease family protein -
  DBP88_RS10305 (DBP88_10390) matP 1709788..1710240 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  DBP88_RS10310 (DBP88_10395) ompA 1710306..1711358 (-) 1053 WP_017694761.1 porin OmpA -
  DBP88_RS10315 (DBP88_10400) sulA 1711715..1712224 (-) 510 WP_032610196.1 SOS-induced cell division inhibitor SulA -
  DBP88_RS10320 (DBP88_10405) sxy/tfoX 1712442..1713068 (+) 627 WP_023299743.1 TfoX/Sxy family DNA transformation protein Regulator
  DBP88_RS10325 (DBP88_10410) yccS 1713025..1715187 (-) 2163 WP_023305820.1 YccS family putative transporter -
  DBP88_RS10330 (DBP88_10415) - 1715206..1715652 (-) 447 WP_023299745.1 YccF domain-containing protein -
  DBP88_RS10335 (DBP88_10420) helD 1715775..1717829 (+) 2055 WP_032676335.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23988.54 Da        Isoelectric Point: 9.4592

>NTDB_id=285410 DBP88_RS10320 WP_023299743.1 1712442..1713068(+) (sxy/tfoX) [Enterobacter hormaechei strain SCEH020042]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=285410 DBP88_RS10320 WP_023299743.1 1712442..1713068(+) (sxy/tfoX) [Enterobacter hormaechei strain SCEH020042]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTATTCGCGATGGTGTCTGACGGTGAGCTTTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCTTCTTTTCTGACCCTGATGAAACGAGGACGTCCTGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACTAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCGATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572

Multiple sequence alignment