Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DAI21_RS18945 Genome accession   NZ_CP028520
Coordinates   3887665..3888291 (-) Length   208 a.a.
NCBI ID   WP_107704294.1    Uniprot ID   -
Organism   Lelliottia sp. WB101     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3882665..3893291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAI21_RS18930 (DAI21_18930) helD 3882902..3884956 (-) 2055 WP_107703916.1 DNA helicase IV -
  DAI21_RS18935 (DAI21_18935) - 3885080..3885526 (+) 447 WP_107703917.1 YccF domain-containing protein -
  DAI21_RS18940 (DAI21_18940) yccS 3885546..3887708 (+) 2163 WP_107703918.1 YccS family putative transporter -
  DAI21_RS18945 (DAI21_18945) sxy/tfoX 3887665..3888291 (-) 627 WP_107704294.1 TfoX/Sxy family DNA transformation protein Regulator
  DAI21_RS18950 (DAI21_18950) sulA 3888510..3889019 (+) 510 WP_102105589.1 SOS-induced cell division inhibitor SulA -
  DAI21_RS18965 (DAI21_18965) ompA 3889376..3890431 (+) 1056 WP_107703919.1 porin OmpA -
  DAI21_RS18970 (DAI21_18970) matP 3890495..3890947 (-) 453 WP_100780685.1 macrodomain Ter protein MatP -
  DAI21_RS18975 (DAI21_18975) - 3891134..3892894 (+) 1761 WP_107703920.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23952.56 Da        Isoelectric Point: 9.0848

>NTDB_id=285402 DAI21_RS18945 WP_107704294.1 3887665..3888291(-) (sxy/tfoX) [Lelliottia sp. WB101]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVNEAVFAMVSDGELYLRACEQSAQYCVKQSSSFLTLLKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALEAARQERSLRHQRRRLKDLPNLTFQIEVLLCEAGVTSETMLRALGAEECWLKIRARN
KNLGIRVLFALAGAIEGTHEAALPTVRRRELTEWFNALPVLPDNHSDR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=285402 DAI21_RS18945 WP_107704294.1 3887665..3888291(-) (sxy/tfoX) [Lelliottia sp. WB101]
ATGAAAAAGATATCTTATGAACGGATCTATAAGTCCCAGGAATACCTCTCTCCGTTGGGTGAAATCCATCATCGTGCCCT
TTTCGGTGGGTATACCCTGGCGGTGAATGAAGCCGTGTTTGCGATGGTCTCTGATGGCGAGCTTTACCTGCGTGCCTGTG
AACAAAGCGCTCAGTACTGTGTAAAACAGTCCTCTTCATTTTTAACCCTGTTGAAACGGGGTAGGCCTGTACTGCTGAAC
TATTACCGGGTGGATGACGGGCTATGGCAGGACAGGGAAAGGTTATTGCAACTTTCCAGTTTTGCACTTGAAGCCGCCCG
TCAGGAGCGCTCTCTACGGCATCAGAGGCGGCGACTCAAAGATTTGCCCAACCTGACGTTTCAGATTGAAGTGCTTCTCT
GCGAAGCTGGCGTCACCAGCGAAACCATGCTGAGGGCGCTAGGGGCAGAGGAGTGCTGGCTGAAAATCAGGGCCAGAAAT
AAGAACCTGGGGATCAGAGTGTTGTTTGCGCTCGCAGGGGCAATAGAAGGAACGCATGAAGCTGCGCTCCCGACGGTCAG
ACGCCGGGAGCTAACGGAGTGGTTTAATGCGCTTCCTGTACTGCCGGATAATCATTCCGATAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.576

95.192

0.548

Multiple sequence alignment