Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EGY17_RS08265 Genome accession   NZ_CP033850
Coordinates   1324038..1324706 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain FDAARGOS_497     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1319038..1329706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY17_RS08235 (EGY17_08245) rfaQ 1319216..1320274 (-) 1059 WP_000360395.1 lipopolysaccharide core heptosyltransferase RfaQ -
  EGY17_RS08240 (EGY17_08250) waaA 1320687..1321964 (+) 1278 WP_000891574.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  EGY17_RS08245 (EGY17_08255) coaD 1321972..1322451 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  EGY17_RS08250 (EGY17_08260) mutM 1322490..1323299 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  EGY17_RS08255 (EGY17_08265) rpmG 1323397..1323564 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  EGY17_RS08260 (EGY17_08270) rpmB 1323585..1323821 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  EGY17_RS08265 (EGY17_08275) radC 1324038..1324706 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  EGY17_RS08270 (EGY17_08280) coaBC 1324878..1326098 (+) 1221 WP_000050149.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EGY17_RS08275 (EGY17_08285) dut 1326076..1326534 (+) 459 WP_000976070.1 dUTP diphosphatase -
  EGY17_RS08280 (EGY17_08290) slmA 1326641..1327237 (+) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  EGY17_RS08285 (EGY17_08295) - 1327283..1328242 (-) 960 WP_022646277.1 reverse transcriptase family protein -
  EGY17_RS08290 (EGY17_08300) pyrE 1328540..1329181 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=285400 EGY17_RS08265 WP_001297375.1 1324038..1324706(-) (radC) [Escherichia coli strain FDAARGOS_497]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=285400 EGY17_RS08265 WP_001297375.1 1324038..1324706(-) (radC) [Escherichia coli strain FDAARGOS_497]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAGTTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTTACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAATGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTAATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496