Detailed information NTG0285380

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EGY17_RS02900
• Genome accession: NZ_CP033850
• Coordinates: 229568..230560 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_497
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 224568..235560

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGY17_RS02875 (EGY17_02875)	pphB	225928..226584 (+)	657	WP_022646027.1	protein-serine/threonine phosphatase	-
EGY17_RS02880 (EGY17_02880)	-	226625..226861 (-)	237	WP_000562980.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
EGY17_RS02885 (EGY17_02885)	-	226872..228299 (-)	1428	WP_000863202.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
EGY17_RS02890 (EGY17_02890)	-	228299..228893 (-)	595	Protein_206	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
EGY17_RS02895 (EGY17_02895)	-	229040..229447 (+)	408	WP_001208067.1	MarR family transcriptional regulator	-
EGY17_RS02900 (EGY17_02900)	rpoS	229568..230560 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EGY17_RS02905 (EGY17_02905)	nlpD	230623..231717 (-)	1095	WP_306305266.1	murein hydrolase activator NlpD	-
EGY17_RS02910 (EGY17_02910)	pcm	231902..232528 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EGY17_RS02915 (EGY17_02915)	surE	232522..233283 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
EGY17_RS02920 (EGY17_02920)	truD	233264..234313 (-)	1050	WP_022646031.1	tRNA pseudouridine(13) synthase TruD	-
EGY17_RS02925 (EGY17_02925)	ispF	234310..234789 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EGY17_RS02930 (EGY17_02930)	ispD	234789..235499 (-)	711	WP_000246131.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=285380 EGY17_RS02900 WP_000081550.1 229568..230560(-) (rpoS) [Escherichia coli strain FDAARGOS_497]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=285380 EGY17_RS02900 WP_000081550.1 229568..230560(-) (rpoS) [Escherichia coli strain FDAARGOS_497]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCTTTGCTGGATCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715