Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EGY17_RS02620 Genome accession   NZ_CP033850
Coordinates   179674..180189 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain FDAARGOS_497     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 174674..185189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY17_RS02595 (EGY17_02600) ygaZ 175073..175810 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  EGY17_RS02600 (EGY17_02605) ygaH 175800..176135 (+) 336 WP_000119759.1 L-valine transporter subunit YgaH -
  EGY17_RS02605 (EGY17_02610) emrR 176226..176756 (+) 531 WP_000378441.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  EGY17_RS02610 (EGY17_02615) emrA 176883..178055 (+) 1173 WP_022646013.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EGY17_RS02615 (EGY17_02620) emrB 178072..179610 (+) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  EGY17_RS02620 (EGY17_02625) luxS 179674..180189 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  EGY17_RS02625 (EGY17_02630) gshA 180339..181895 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  EGY17_RS02630 (EGY17_02635) yqaA 181968..182396 (-) 429 WP_001287454.1 YqaA family protein -
  EGY17_RS02635 (EGY17_02640) yqaB 182393..182959 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EGY17_RS02665 (EGY17_02670) csrA 184147..184332 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=285377 EGY17_RS02620 WP_001130211.1 179674..180189(-) (luxS) [Escherichia coli strain FDAARGOS_497]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=285377 EGY17_RS02620 WP_001130211.1 179674..180189(-) (luxS) [Escherichia coli strain FDAARGOS_497]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment