Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EGY29_RS32540 Genome accession   NZ_CP033843
Coordinates   6779043..6779639 (-) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa strain FDAARGOS_501     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6774043..6784639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY29_RS33435 - 6774437..6774586 (-) 150 Protein_6281 hypothetical protein -
  EGY29_RS32520 (EGY29_32380) - 6774679..6776262 (+) 1584 WP_074209989.1 flavin-containing monooxygenase -
  EGY29_RS32525 (EGY29_32385) - 6776259..6777146 (+) 888 WP_003087246.1 SDR family NAD(P)-dependent oxidoreductase -
  EGY29_RS32530 (EGY29_32390) - 6777220..6777759 (+) 540 WP_003087245.1 CbrC family protein -
  EGY29_RS32535 (EGY29_32395) - 6777772..6778920 (-) 1149 WP_003087244.1 acyl-CoA dehydrogenase family protein -
  EGY29_RS32540 (EGY29_32400) recR 6779043..6779639 (-) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  EGY29_RS32545 (EGY29_32405) - 6779718..6780044 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  EGY29_RS32550 (EGY29_32410) dnaX 6780090..6782159 (-) 2070 WP_023100487.1 DNA polymerase III subunit gamma/tau -
  EGY29_RS32555 (EGY29_32415) - 6782196..6783062 (+) 867 WP_023657576.1 substrate-binding periplasmic protein -
  EGY29_RS32565 (EGY29_32425) - 6783316..6783693 (-) 378 WP_003083354.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=285372 EGY29_RS32540 WP_003087237.1 6779043..6779639(-) (recR) [Pseudomonas aeruginosa strain FDAARGOS_501]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=285372 EGY29_RS32540 WP_003087237.1 6779043..6779639(-) (recR) [Pseudomonas aeruginosa strain FDAARGOS_501]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCTCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTGGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGTGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48