Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EGY29_RS23640 Genome accession   NZ_CP033843
Coordinates   4932048..4932542 (-) Length   164 a.a.
NCBI ID   WP_023093430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain FDAARGOS_501     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4927048..4937542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY29_RS23615 (EGY29_23540) - 4927202..4928722 (-) 1521 WP_023093425.1 conjugal transfer protein TraG N-terminal domain-containing protein -
  EGY29_RS23620 (EGY29_23545) - 4928738..4929094 (-) 357 WP_023093426.1 hypothetical protein -
  EGY29_RS23625 (EGY29_23550) - 4929091..4930485 (-) 1395 WP_023093427.1 integrating conjugative element protein -
  EGY29_RS23630 (EGY29_23555) - 4930495..4931442 (-) 948 WP_034084949.1 TIGR03756 family integrating conjugative element protein -
  EGY29_RS23635 (EGY29_23560) - 4931439..4931885 (-) 447 WP_023093429.1 TIGR03757 family integrating conjugative element protein -
  EGY29_RS23640 (EGY29_23565) radC 4932048..4932542 (-) 495 WP_023093430.1 JAB domain-containing protein Machinery gene
  EGY29_RS23645 (EGY29_23570) - 4932718..4933482 (-) 765 WP_023093431.1 DsbA family protein -
  EGY29_RS23650 (EGY29_23575) - 4933496..4936363 (-) 2868 WP_023093432.1 conjugative transfer ATPase -
  EGY29_RS23655 (EGY29_23580) - 4936363..4936803 (-) 441 WP_009459662.1 TIGR03751 family conjugal transfer lipoprotein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17929.72 Da        Isoelectric Point: 6.0752

>NTDB_id=285356 EGY29_RS23640 WP_023093430.1 4932048..4932542(-) (radC) [Pseudomonas aeruginosa strain FDAARGOS_501]
MSFVVNDSCLESLSATAAQHEDWIIQQAIVLLERRVFKAGPCLSRPAAVRDYLRLKLVAEPNEIFAAVFLNSMNQVLAYE
PLFKGTINATSVYPRVVVQRVLELNAAAVVFAHQHPSGISEPSSADRMLTQQLQAALALIDVRVLDHIIVGQGSPFSFAE
SGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=285356 EGY29_RS23640 WP_023093430.1 4932048..4932542(-) (radC) [Pseudomonas aeruginosa strain FDAARGOS_501]
ATGTCTTTCGTCGTCAACGACTCCTGCCTGGAGTCGCTTTCCGCCACCGCTGCCCAACACGAGGACTGGATCATCCAGCA
AGCCATCGTGCTGCTGGAGAGGCGGGTTTTCAAAGCTGGACCGTGCCTCAGCCGACCGGCCGCTGTGCGGGACTACCTGC
GCCTGAAACTGGTCGCTGAGCCCAACGAGATATTCGCCGCTGTGTTCCTGAACAGCATGAACCAGGTGCTGGCCTACGAG
CCGCTGTTCAAGGGCACGATCAACGCGACTTCGGTCTATCCACGTGTCGTCGTACAGCGTGTGCTGGAGCTGAATGCCGC
CGCGGTGGTCTTCGCCCACCAGCACCCCTCGGGCATCTCCGAACCGTCGAGCGCGGATCGCATGCTGACCCAGCAACTGC
AGGCCGCGCTGGCGCTCATCGATGTGCGGGTACTGGACCACATCATCGTCGGCCAGGGTTCCCCGTTCTCCTTTGCGGAG
TCCGGCCTGCTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

41.096

89.024

0.366

Multiple sequence alignment