Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   FORC085_RS06685 Genome accession   NZ_CP028516
Coordinates   1323370..1323693 (-) Length   107 a.a.
NCBI ID   WP_000578884.1    Uniprot ID   A0A9W5R9C5
Organism   Bacillus cereus strain 1000305     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1318370..1328693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC085_RS06660 (FORC085_1267) - 1318723..1320009 (+) 1287 WP_000247021.1 D-alanyl-D-alanine carboxypeptidase family protein -
  FORC085_RS06665 (FORC085_1268) - 1320200..1320769 (+) 570 WP_025709886.1 signal peptidase I -
  FORC085_RS06670 (FORC085_1269) - 1320830..1321417 (+) 588 WP_000172852.1 CalY family protein -
  FORC085_RS06675 (FORC085_1270) - 1321552..1322331 (+) 780 WP_025709887.1 DUF4047 domain-containing protein -
  FORC085_RS06680 (FORC085_1271) calY 1322709..1323302 (+) 594 WP_000053714.1 biofilm matrix protein CalY -
  FORC085_RS06685 (FORC085_1272) sinR 1323370..1323693 (-) 324 WP_000578884.1 helix-turn-helix domain-containing protein Regulator
  FORC085_RS06690 (FORC085_1273) - 1323773..1323907 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  FORC085_RS06695 (FORC085_1274) inhA1 1324250..1326640 (+) 2391 WP_001035937.1 M6 family metalloprotease immune inhibitor InhA1 -
  FORC085_RS06700 (FORC085_1275) - 1326812..1328179 (+) 1368 WP_025709888.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12335.17 Da        Isoelectric Point: 9.6244

>NTDB_id=285354 FORC085_RS06685 WP_000578884.1 1323370..1323693(-) (sinR) [Bacillus cereus strain 1000305]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNNK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=285354 FORC085_RS06685 WP_000578884.1 1323370..1323693(-) (sinR) [Bacillus cereus strain 1000305]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATAATAA
ATAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682

Multiple sequence alignment