Detailed information NTG0285341

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EGY29_RS19180
• Genome accession: NZ_CP033843
• Coordinates: 4008537..4009541 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain FDAARGOS_501
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4003537..4014541

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGY29_RS19150 (EGY29_19095)	fghA	4003629..4004480 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
EGY29_RS19155 (EGY29_19100)	ispF	4004551..4005024 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EGY29_RS19160 (EGY29_19105)	truD	4005021..4006088 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
EGY29_RS19165 (EGY29_19110)	surE	4006076..4006825 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
EGY29_RS19170 (EGY29_19115)	-	4006858..4007493 (+)	636	WP_073660134.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EGY29_RS19175 (EGY29_19120)	-	4007539..4008432 (+)	894	WP_003092335.1	peptidoglycan DD-metalloendopeptidase family protein	-
EGY29_RS19180 (EGY29_19125)	rpoS	4008537..4009541 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
EGY29_RS19185 (EGY29_19130)	fdxA	4009968..4010291 (-)	324	WP_003092272.1	ferredoxin FdxA	-
EGY29_RS19190 (EGY29_19135)	mutS	4010358..4012925 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
EGY29_RS19200 (EGY29_19145)	-	4013051..4014058 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=285341 EGY29_RS19180 WP_003113871.1 4008537..4009541(+) (rpoS) [Pseudomonas aeruginosa strain FDAARGOS_501]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=285341 EGY29_RS19180 WP_003113871.1 4008537..4009541(+) (rpoS) [Pseudomonas aeruginosa strain FDAARGOS_501]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653