Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CFE_RS13385 Genome accession   NZ_CP028491
Coordinates   2608342..2609700 (-) Length   452 a.a.
NCBI ID   WP_078666447.1    Uniprot ID   -
Organism   Carboxydocella thermautotrophica strain 019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2603342..2614700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFE_RS13355 (CFE_2695) ispF 2603787..2604254 (-) 468 WP_078666456.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  CFE_RS13360 (CFE_2696) ispD 2604271..2604978 (-) 708 WP_078666442.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  CFE_RS13365 (CFE_2697) - 2604965..2606095 (-) 1131 WP_078666443.1 PIN/TRAM domain-containing protein -
  CFE_RS13370 (CFE_2698) - 2606162..2606638 (-) 477 WP_078666444.1 CarD family transcriptional regulator -
  CFE_RS13375 (CFE_2699) - 2606846..2607241 (+) 396 WP_078666445.1 DUF1573 domain-containing protein -
  CFE_RS13380 (CFE_2700) disA 2607284..2608345 (-) 1062 WP_078666446.1 DNA integrity scanning diadenylate cyclase DisA -
  CFE_RS13385 (CFE_2701) radA 2608342..2609700 (-) 1359 WP_078666447.1 DNA repair protein RadA Machinery gene
  CFE_RS13390 (CFE_2702) - 2610040..2610666 (+) 627 WP_078666448.1 SurA N-terminal domain-containing protein -
  CFE_RS13395 (CFE_2703) - 2610800..2611069 (+) 270 WP_078666449.1 hypothetical protein -
  CFE_RS13400 (CFE_2704) - 2611246..2611848 (+) 603 WP_078666450.1 hypothetical protein -
  CFE_RS13405 (CFE_2705) - 2611868..2612404 (+) 537 WP_078666451.1 hypothetical protein -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48629.12 Da        Isoelectric Point: 6.5091

>NTDB_id=285332 CFE_RS13385 WP_078666447.1 2608342..2609700(-) (radA) [Carboxydocella thermautotrophica strain 019]
MKREKTRYVCQNCGQVELRWLGRCPGCGEWNSLVEEVRQETRTATSGKKIIPVPLPQIKTEKQERAATGLAELDRVLGGG
LVRGSLVLVGGDPGIGKSTLLLQAAGYLAQKGPVLYISAEESLSQLRMRAERLGVEGPQVLAAAENCLEDILTAVDAGQD
WQAVIIDSIQTVHSREITSAPGSVSQVRHCTGLLLDLAKGREIATLIVGHVTKEGALAGPRVLEHMVDTVLYFEGERHQN
YRLLRAVKNRFGSTNELGLFEMTGSGLIDVSNPSGLLLAQRPVGEPGSVVVVAMEGSRPILVEIQALISPGNLANPRRMT
SGLDYQRVALLLAVLEKRLGMQLSHMDAFVNVAGGLKLTEPAVDLGVAVALASSWRERSVDPEMVIIGEVGLTGEVRRVN
QMEKRLQEAARIGFKRAVVPSGQKPEGPAELEIIEVGTVAEALDWSLGGMGR

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=285332 CFE_RS13385 WP_078666447.1 2608342..2609700(-) (radA) [Carboxydocella thermautotrophica strain 019]
TTGAAACGGGAAAAAACGCGGTATGTTTGCCAGAATTGCGGTCAGGTGGAACTGCGCTGGCTGGGACGCTGTCCTGGTTG
CGGTGAGTGGAATAGCCTGGTGGAGGAAGTGCGTCAGGAAACCAGAACAGCAACAAGTGGAAAAAAGATCATTCCGGTGC
CGCTGCCCCAGATCAAAACAGAGAAGCAGGAACGGGCTGCTACCGGTCTGGCTGAGCTGGACCGGGTGTTAGGAGGTGGA
CTGGTGCGGGGTTCCCTGGTGCTGGTAGGAGGTGACCCCGGTATCGGTAAATCCACTTTGCTTCTGCAGGCAGCTGGATA
TCTGGCCCAAAAGGGCCCGGTGTTGTATATTTCTGCGGAAGAGTCGCTGAGCCAGTTGCGGATGCGGGCGGAACGGCTGG
GAGTGGAGGGGCCGCAGGTGCTGGCAGCGGCGGAAAACTGCCTGGAGGATATCCTGACGGCAGTAGATGCCGGCCAGGAT
TGGCAGGCGGTGATTATCGATTCCATCCAGACCGTGCACAGCCGGGAAATTACCTCCGCTCCGGGCAGTGTCAGTCAGGT
GCGGCATTGTACCGGACTCTTGCTGGATCTGGCCAAGGGCAGGGAGATTGCCACTCTGATTGTAGGTCATGTCACAAAAG
AAGGAGCTCTGGCGGGACCGCGGGTACTTGAGCATATGGTGGATACTGTCCTGTATTTTGAGGGAGAACGTCACCAGAAT
TACCGCCTGTTGCGGGCAGTGAAAAACCGCTTTGGCTCCACCAATGAGCTGGGCCTGTTCGAAATGACCGGCAGTGGACT
GATTGATGTCAGTAACCCCTCGGGGCTATTGCTGGCCCAGCGCCCTGTTGGCGAACCGGGTTCTGTGGTAGTGGTGGCTA
TGGAGGGCAGCCGTCCTATTCTGGTGGAAATCCAGGCTCTGATATCGCCAGGCAATCTGGCCAACCCTCGCCGCATGACC
TCGGGGCTGGATTATCAGCGGGTGGCGTTGCTGCTGGCGGTGCTGGAAAAGCGCCTGGGCATGCAGTTGAGCCACATGGA
TGCCTTTGTTAATGTGGCTGGTGGTTTGAAGCTGACGGAACCGGCGGTGGATCTGGGGGTAGCGGTAGCGCTGGCCTCCA
GCTGGCGAGAGCGGTCGGTAGACCCCGAGATGGTAATTATCGGGGAAGTGGGCTTGACAGGTGAGGTGCGGCGGGTAAAC
CAGATGGAAAAACGCTTGCAGGAAGCCGCCAGGATCGGATTTAAACGGGCAGTGGTGCCTTCGGGGCAAAAACCGGAAGG
CCCGGCCGAGTTGGAAATAATAGAAGTAGGGACGGTAGCAGAAGCATTAGACTGGTCTTTAGGGGGAATGGGCAGATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-215)

Subunit ChlI of Mg-chelatase (ChlI)

(339-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.68

100

0.549
  radA Streptococcus mitis NCTC 12261

53.097

100

0.531
  radA Streptococcus mitis SK321

52.876

100

0.529
  radA Streptococcus pneumoniae Rx1

52.667

99.558

0.524
  radA Streptococcus pneumoniae D39

52.667

99.558

0.524
  radA Streptococcus pneumoniae R6

52.667

99.558

0.524
  radA Streptococcus pneumoniae TIGR4

52.667

99.558

0.524

Multiple sequence alignment