Detailed information NTG0285257

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EGY27_RS27710
• Genome accession: NZ_CP033835
• Coordinates: 5625352..5626356 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain FDAARGOS_570
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5620352..5631356

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGY27_RS27690 (EGY27_27555)	-	5620835..5621842 (+)	1008	WP_010793357.1	TolB family protein	-
EGY27_RS27700 (EGY27_27565)	mutS	5621968..5624535 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
EGY27_RS27705 (EGY27_27570)	fdxA	5624602..5624925 (+)	324	WP_003119354.1	ferredoxin FdxA	-
EGY27_RS27710 (EGY27_27575)	rpoS	5625352..5626356 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
EGY27_RS27715 (EGY27_27580)	-	5626461..5627354 (-)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
EGY27_RS27720 (EGY27_27585)	-	5627400..5628035 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EGY27_RS27725 (EGY27_27590)	surE	5628068..5628817 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
EGY27_RS27730 (EGY27_27595)	truD	5628805..5629872 (-)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
EGY27_RS27735 (EGY27_27600)	ispF	5629869..5630342 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EGY27_RS27740 (EGY27_27605)	fghA	5630413..5631264 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=285257 EGY27_RS27710 WP_003113871.1 5625352..5626356(-) (rpoS) [Pseudomonas aeruginosa strain FDAARGOS_570]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=285257 EGY27_RS27710 WP_003113871.1 5625352..5626356(-) (rpoS) [Pseudomonas aeruginosa strain FDAARGOS_570]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653