Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   C5Y81_RS10400 Genome accession   NZ_CP028470
Coordinates   2033871..2034587 (+) Length   238 a.a.
NCBI ID   WP_054193544.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IT4-R     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2028871..2039587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Y81_RS10370 (C5Y81_10370) istB 2029063..2029830 (-) 768 WP_001095317.1 IS21-like element helper ATPase IstB -
  C5Y81_RS10375 (C5Y81_10375) istA 2029842..2031038 (-) 1197 WP_142386501.1 IS21 family transposase -
  C5Y81_RS14695 (C5Y81_10380) - 2031459..2031593 (-) 135 WP_001549197.1 delta-lysin family phenol-soluble modulin -
  C5Y81_RS10385 (C5Y81_10385) agrB 2031829..2032398 (+) 570 WP_001105713.1 accessory gene regulator AgrB -
  C5Y81_RS10390 (C5Y81_10390) - 2032395..2032535 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide -
  C5Y81_RS10395 (C5Y81_10395) - 2032560..2033852 (+) 1293 WP_001670396.1 GHKL domain-containing protein -
  C5Y81_RS10400 (C5Y81_10400) agrA 2033871..2034587 (+) 717 WP_054193544.1 LytTR family DNA-binding domain-containing protein Regulator
  C5Y81_RS10405 (C5Y81_10405) - 2034659..2034766 (+) 108 WP_031789494.1 hypothetical protein -
  C5Y81_RS10410 (C5Y81_10410) - 2034955..2035914 (-) 960 WP_001253301.1 carbohydrate kinase -
  C5Y81_RS10415 (C5Y81_10415) - 2035911..2037395 (-) 1485 WP_000141410.1 glycoside hydrolase family 32 protein -
  C5Y81_RS10420 (C5Y81_10420) - 2037544..2038494 (-) 951 WP_000790322.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27891.83 Da        Isoelectric Point: 5.8598

>NTDB_id=285217 C5Y81_RS10400 WP_054193544.1 2033871..2034587(+) (agrA) [Staphylococcus aureus strain IT4-R]
MKIFICEDDPKQRENMVTIIKNYIMIEENPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=285217 C5Y81_RS10400 WP_054193544.1 2033871..2034587(+) (agrA) [Staphylococcus aureus strain IT4-R]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAATCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATCCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCATAGTGAACTTACGTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACACGTATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATCGAATCTATAG
ATTCGAAAGAGCGCATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996

Multiple sequence alignment