Detailed information NTG0285144

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EGY26_RS22780
• Genome accession: NZ_CP033833
• Coordinates: 4695391..4696395 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain FDAARGOS_571
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4690391..4701395

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGY26_RS22750 (EGY26_22685)	fghA	4690483..4691334 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
EGY26_RS22755 (EGY26_22690)	ispF	4691405..4691878 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EGY26_RS22760 (EGY26_22695)	truD	4691875..4692942 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
EGY26_RS22765 (EGY26_22700)	surE	4692930..4693679 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
EGY26_RS22770 (EGY26_22705)	-	4693712..4694347 (+)	636	WP_073660134.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EGY26_RS22775 (EGY26_22710)	-	4694393..4695286 (+)	894	WP_003092335.1	peptidoglycan DD-metalloendopeptidase family protein	-
EGY26_RS22780 (EGY26_22715)	rpoS	4695391..4696395 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
EGY26_RS22785 (EGY26_22720)	fdxA	4696822..4697145 (-)	324	WP_003092272.1	ferredoxin FdxA	-
EGY26_RS22790 (EGY26_22725)	mutS	4697212..4699779 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
EGY26_RS22800 (EGY26_22735)	-	4699905..4700912 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=285144 EGY26_RS22780 WP_003113871.1 4695391..4696395(+) (rpoS) [Pseudomonas aeruginosa strain FDAARGOS_571]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=285144 EGY26_RS22780 WP_003113871.1 4695391..4696395(+) (rpoS) [Pseudomonas aeruginosa strain FDAARGOS_571]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653