Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CNCMI4602_RS00920 Genome accession   NZ_CP028460
Coordinates   199654..201501 (+) Length   615 a.a.
NCBI ID   WP_048340813.1    Uniprot ID   -
Organism   Bifidobacterium animalis subsp. animalis strain CNCM I-4602     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 194654..206501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNCMI4602_RS00905 (CNCMI4602_0166) - 195910..196725 (-) 816 WP_014697097.1 ABC transporter ATP-binding protein -
  CNCMI4602_RS00910 (CNCMI4602_0167) - 197010..197603 (+) 594 WP_014697098.1 MarR family transcriptional regulator -
  CNCMI4602_RS00915 (CNCMI4602_0168) rcrP 197675..199594 (+) 1920 WP_014697099.1 ABC transporter ATP-binding protein Regulator
  CNCMI4602_RS00920 (CNCMI4602_0169) rcrQ 199654..201501 (+) 1848 WP_048340813.1 ABC transporter ATP-binding protein Regulator
  CNCMI4602_RS00925 (CNCMI4602_0170) - 201520..203034 (-) 1515 WP_014697101.1 polysaccharide deacetylase family protein -
  CNCMI4602_RS00930 (CNCMI4602_0171) - 203435..204109 (-) 675 WP_237705819.1 phosphatase PAP2 family protein -
  CNCMI4602_RS00935 (CNCMI4602_0172) - 204200..204835 (+) 636 WP_014697103.1 sugar O-acetyltransferase -
  CNCMI4602_RS00940 (CNCMI4602_0173) - 204926..205342 (+) 417 WP_014697104.1 hypothetical protein -

Sequence

Protein


Download         Length: 615 a.a.        Molecular weight: 67406.76 Da        Isoelectric Point: 5.1476

>NTDB_id=285124 CNCMI4602_RS00920 WP_048340813.1 199654..201501(+) (rcrQ) [Bifidobacterium animalis subsp. animalis strain CNCM I-4602]
MPGPMGHGRAGAPVEKADDFGGALKELMRFSKRYIPAIVIALILGVGGAICQIIGPDYLGDMTDEITKGLPALVHGKPVL
RSIDMAAVAHIGWTLVALYVGYALLSYVQSWMMATVTQRTAQRLRAAIDVKMNKLPLKYFDEHSTGDVMSRITNDVDAVG
QTLGQSLGTLISSITLFVGSLVMMFANNWILALCAVGASLLGMVLMLVVMKFSQKYFVKQQMALGDVNGHVEEMYSGHTV
VKAFGGEADAIRRFERYNNDLYESGWKSQFISGLMMPMMNLVGNLGYVVVCVVGAALAMNGTIEFGVIVAFMLYIRLFTQ
PLSQFAQAFQNLQRCAAGSERVFTFLNEPELADESDKQPLLGYGSNGEITPVEGRVSFEHVKFGYEPNKLVIHDFSADVE
PGQKVAIVGPTGAGKTTMVNLLMRFYEIAGGKISIDGIDTKSVPRWNVHDQFSMVLQDTWVFNGTVRENVAYAKEDVTDE
QVVAACRAVGLDRYIRSLPNGYDTVLDESATLSQGQKQLLTIARAMVQDSPILILDEATSSVDTRTEELIQAAMDKLTEG
RTSFVIAHRLSTIRDADMILVMRDGDIVERGTHDELLARNGFYADIYNAQFTLAQ

Nucleotide


Download         Length: 1848 bp        

>NTDB_id=285124 CNCMI4602_RS00920 WP_048340813.1 199654..201501(+) (rcrQ) [Bifidobacterium animalis subsp. animalis strain CNCM I-4602]
ATGCCAGGACCAATGGGACATGGGCGTGCAGGCGCGCCCGTGGAGAAAGCCGATGATTTCGGCGGCGCGCTCAAGGAGCT
GATGCGCTTCAGCAAACGGTACATTCCGGCGATCGTCATCGCGCTGATCCTCGGCGTCGGCGGTGCGATCTGCCAGATCA
TAGGGCCGGACTACCTCGGCGATATGACCGACGAGATCACCAAGGGACTGCCCGCGCTCGTGCACGGCAAGCCGGTGCTG
CGTTCGATCGACATGGCCGCGGTGGCGCACATCGGGTGGACGCTCGTGGCGCTCTACGTGGGCTACGCACTGCTTTCGTA
CGTGCAGAGCTGGATGATGGCCACCGTCACGCAGCGCACGGCGCAACGCCTGCGCGCGGCCATCGACGTGAAGATGAACA
AGCTGCCGCTCAAATACTTCGACGAGCACAGCACCGGCGACGTGATGAGTCGCATCACGAACGACGTGGACGCCGTGGGG
CAGACGCTCGGGCAGTCCCTCGGCACGCTCATCTCGTCGATCACGCTGTTCGTGGGCTCGCTCGTCATGATGTTCGCGAA
CAACTGGATCCTGGCATTGTGCGCAGTGGGCGCGAGCCTGCTCGGCATGGTGCTCATGCTCGTCGTGATGAAGTTCTCGC
AGAAGTACTTCGTCAAGCAGCAGATGGCACTCGGCGACGTGAACGGCCATGTGGAGGAGATGTACAGCGGGCACACCGTG
GTCAAGGCCTTCGGCGGCGAGGCCGACGCGATCCGCAGATTCGAACGCTACAACAACGACCTGTACGAATCGGGTTGGAA
GAGCCAGTTCATCTCGGGGCTCATGATGCCGATGATGAACCTCGTGGGCAACCTCGGCTACGTGGTCGTGTGCGTGGTCG
GCGCGGCGCTCGCGATGAACGGCACCATCGAATTCGGTGTGATCGTGGCGTTCATGCTCTACATTCGCCTGTTCACGCAG
CCGCTCTCGCAGTTTGCGCAGGCGTTCCAGAATCTGCAACGCTGCGCCGCGGGCTCCGAACGTGTGTTCACCTTCCTCAA
CGAGCCCGAGCTCGCCGACGAGTCCGACAAGCAACCGCTGCTCGGCTACGGCAGCAACGGCGAGATCACGCCCGTCGAAG
GGCGCGTGAGCTTCGAGCACGTGAAATTCGGGTATGAGCCGAACAAGCTCGTCATCCATGATTTCTCGGCGGACGTGGAG
CCTGGGCAGAAAGTGGCGATCGTGGGGCCCACCGGCGCGGGCAAGACGACGATGGTGAATCTGCTCATGCGATTCTACGA
GATCGCCGGCGGGAAGATCTCGATCGACGGCATCGACACGAAGAGCGTGCCGCGGTGGAACGTGCACGACCAGTTCTCGA
TGGTGCTGCAGGACACCTGGGTGTTCAACGGCACCGTGCGCGAGAATGTGGCGTATGCGAAGGAAGACGTGACCGACGAG
CAGGTGGTCGCCGCCTGCCGTGCCGTGGGACTCGACCGTTACATTCGCTCGCTGCCAAACGGCTACGACACCGTGCTCGA
CGAGTCGGCCACGCTGTCGCAGGGGCAGAAGCAGCTGCTCACCATCGCGCGCGCCATGGTGCAGGATTCGCCGATCCTCA
TTCTCGACGAGGCGACAAGCTCGGTCGATACGCGCACTGAGGAGCTCATCCAGGCGGCGATGGACAAGCTCACCGAGGGG
CGCACCTCGTTCGTCATCGCACACCGGCTCTCCACGATCCGCGACGCCGACATGATCCTCGTCATGCGCGACGGCGACAT
CGTGGAGCGCGGCACGCACGACGAGCTTCTGGCACGCAACGGCTTCTATGCCGACATCTACAACGCGCAGTTCACACTCG
CGCAGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(39-322)

ABC transporter (ABC_tran)

(393-540)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.008

95.772

0.527

Multiple sequence alignment