Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   CNCMI4602_RS00915 Genome accession   NZ_CP028460
Coordinates   197675..199594 (+) Length   639 a.a.
NCBI ID   WP_014697099.1    Uniprot ID   A0AAV2W0W8
Organism   Bifidobacterium animalis subsp. animalis strain CNCM I-4602     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 192675..204594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNCMI4602_RS08530 - 193593..195913 (-) 2321 Protein_160 ABC transporter permease -
  CNCMI4602_RS00905 (CNCMI4602_0166) - 195910..196725 (-) 816 WP_014697097.1 ABC transporter ATP-binding protein -
  CNCMI4602_RS00910 (CNCMI4602_0167) - 197010..197603 (+) 594 WP_014697098.1 MarR family transcriptional regulator -
  CNCMI4602_RS00915 (CNCMI4602_0168) rcrP 197675..199594 (+) 1920 WP_014697099.1 ABC transporter ATP-binding protein Regulator
  CNCMI4602_RS00920 (CNCMI4602_0169) rcrQ 199654..201501 (+) 1848 WP_048340813.1 ABC transporter ATP-binding protein Regulator
  CNCMI4602_RS00925 (CNCMI4602_0170) - 201520..203034 (-) 1515 WP_014697101.1 polysaccharide deacetylase family protein -
  CNCMI4602_RS00930 (CNCMI4602_0171) - 203435..204109 (-) 675 WP_237705819.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 639 a.a.        Molecular weight: 70937.86 Da        Isoelectric Point: 5.1673

>NTDB_id=285123 CNCMI4602_RS00915 WP_014697099.1 197675..199594(+) (rcrP) [Bifidobacterium animalis subsp. animalis strain CNCM I-4602]
MIRIMKYLSKTEIGQLVLSLVTIVGQVYFDLELPSYMSQITRLVETPGSQMRDIWIAGGKMLLVSLGSLACAVVTGYFAA
RVAASFGQRLRSLEFRKVESFGPSEMHRFSTASLITRSTNDITQIQMFITMGLQMLIKAPIMAVWAVCKIAGEGFEWTLA
TGIAVAILIISIAVLMVLVMPKFKAMQQLTDDINLVTRENLTGMRVVRAYNAQDYQEGKFERANSNLTNTQLFTNRAMSV
MMPLMGTIMNGLSLAIYWIGAYLIQDAGLTDKLTLFSNMVVFSSYAMQVVMSFLLMSMVFVLWPRADVSAHRVLEVLDTD
PLVKSGTAKRGLTVQEAKQRGIITPAERARYADDLELAGEIEFRDVSFTYPDSREAMLEHISFTANRGDTVAIIGSTGSG
KSSLINLVPRFYDATDGEVLVDGMNVREYDLKTLRDKIGYVPQRSFLFKGTVESNVSYGDRPDEPENVPMIDVSRMSGRK
AEREFLKADEARELTAQEANRVREASDVAQATEFVSKMPKGFQSPIAQGGTNVSGGQKQRLSIARAVYRDPEILIFDDSF
SALDFKTDREVRDALKETAKDATKLIVAQRVGTIMDADCILVLEDGKVVGQGTHRELLETCEVYQEIAKSQLSEEELSA

Nucleotide


Download         Length: 1920 bp        

>NTDB_id=285123 CNCMI4602_RS00915 WP_014697099.1 197675..199594(+) (rcrP) [Bifidobacterium animalis subsp. animalis strain CNCM I-4602]
ATGATACGAATCATGAAATATCTCTCCAAAACGGAGATAGGGCAGCTGGTGTTGTCGCTGGTCACCATTGTGGGCCAGGT
GTACTTCGACCTCGAACTGCCAAGCTATATGTCACAGATCACGCGGCTCGTGGAGACGCCGGGCAGCCAGATGCGCGACA
TCTGGATCGCCGGCGGCAAGATGCTGCTCGTCTCGCTCGGCTCGCTCGCATGCGCGGTGGTCACCGGCTACTTCGCCGCG
CGCGTGGCCGCCTCGTTCGGCCAGCGTCTGCGCTCGCTCGAGTTCCGCAAGGTGGAGTCGTTCGGGCCGTCCGAAATGCA
CCGCTTCTCCACGGCGAGCCTGATCACGCGTTCGACGAACGACATCACGCAGATTCAGATGTTCATCACGATGGGCTTGC
AGATGCTCATCAAGGCGCCGATCATGGCCGTGTGGGCCGTGTGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGCATCGCCGTGGCGATCCTCATCATCTCGATCGCCGTGCTCATGGTGCTCGTCATGCCGAAGTTCAAGGCAATGCA
GCAGCTCACCGACGACATCAATCTGGTGACGCGCGAGAATCTGACCGGCATGCGCGTCGTGCGCGCCTACAATGCCCAGG
ACTACCAGGAAGGCAAGTTCGAGCGGGCGAACAGCAATCTGACGAACACACAGCTGTTCACGAACCGCGCGATGTCGGTG
ATGATGCCGCTCATGGGCACGATCATGAACGGGCTGTCGCTCGCGATCTACTGGATCGGCGCCTACCTGATCCAGGACGC
CGGCCTGACCGACAAACTCACGCTGTTCTCGAACATGGTCGTGTTCTCCAGCTACGCCATGCAGGTGGTGATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTGTGGCCGCGCGCCGACGTCTCCGCACACCGCGTGCTCGAAGTGCTCGACACCGAC
CCGCTCGTCAAGTCCGGCACCGCCAAGCGTGGGCTCACGGTGCAGGAGGCCAAGCAGCGCGGAATCATCACGCCAGCGGA
ACGTGCGCGATATGCCGACGACCTCGAGCTCGCCGGCGAGATCGAATTCCGCGACGTGAGCTTCACCTACCCCGATTCAC
GCGAGGCGATGCTCGAACACATCAGTTTCACGGCGAACAGGGGAGACACGGTGGCGATCATCGGCTCCACCGGTTCGGGC
AAGTCGTCGCTCATCAATCTCGTGCCGCGCTTCTACGATGCGACGGACGGCGAGGTGCTCGTGGACGGCATGAATGTGCG
CGAATACGACTTGAAGACATTGCGCGACAAGATCGGCTACGTGCCGCAGCGCTCCTTCCTGTTCAAAGGCACCGTCGAAT
CGAATGTGAGCTATGGCGACCGGCCCGACGAACCCGAAAACGTGCCGATGATCGACGTCTCGCGCATGAGCGGCCGCAAG
GCGGAACGGGAGTTCCTCAAGGCCGACGAGGCGCGCGAGCTCACCGCGCAGGAGGCGAACCGCGTGCGCGAGGCGAGCGA
CGTCGCACAGGCCACCGAATTCGTAAGCAAGATGCCGAAAGGCTTCCAGTCGCCGATCGCCCAGGGTGGCACGAATGTGT
CGGGCGGCCAGAAACAGCGCCTGTCGATTGCGCGCGCCGTGTACCGCGACCCGGAGATTCTGATCTTCGACGACTCGTTC
TCGGCACTCGACTTCAAAACCGACCGCGAGGTGCGCGACGCGTTGAAGGAGACGGCGAAGGATGCGACGAAGCTCATCGT
GGCGCAGCGCGTCGGCACGATCATGGACGCGGACTGCATTCTCGTGCTCGAGGACGGCAAGGTGGTGGGTCAAGGCACGC
ACCGCGAACTGCTCGAGACCTGCGAGGTGTACCAGGAGATCGCGAAATCGCAGCTGAGCGAGGAGGAGCTCAGTGCGTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-293)

ABC transporter (ABC_tran)

(378-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.69

100

0.495

Multiple sequence alignment