Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   DA379_RS19045 Genome accession   NZ_CP028441
Coordinates   3781785..3782183 (-) Length   132 a.a.
NCBI ID   WP_003156589.1    Uniprot ID   -
Organism   Bacillus velezensis strain 131-4     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3776785..3787183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA379_RS19860 - 3777788..3777924 (-) 137 Protein_3660 molybdopterin dinucleotide binding domain-containing protein -
  DA379_RS19015 - 3778063..3779265 (+) 1203 WP_003156595.1 GTP-binding protein -
  DA379_RS19020 - 3779330..3780466 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  DA379_RS19025 - 3780481..3780915 (+) 435 WP_003156592.1 RDD family protein -
  DA379_RS19030 - 3780987..3781307 (+) 321 WP_003156590.1 YckD family protein -
  DA379_RS20010 - 3781411..3781527 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  DA379_RS19040 - 3781526..3781744 (+) 219 Protein_3666 family 1 glycosylhydrolase -
  DA379_RS19045 nin/comJ 3781785..3782183 (-) 399 WP_003156589.1 competence protein ComJ Regulator
  DA379_RS19050 nucA/comI 3782205..3782642 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  DA379_RS19055 hxlB 3783001..3783558 (-) 558 WP_003156587.1 6-phospho-3-hexuloisomerase -
  DA379_RS19060 hxlA 3783555..3784190 (-) 636 WP_003156586.1 3-hexulose-6-phosphate synthase -
  DA379_RS19065 - 3784422..3784784 (+) 363 WP_003156585.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15077.06 Da        Isoelectric Point: 4.6564

>NTDB_id=285116 DA379_RS19045 WP_003156589.1 3781785..3782183(-) (nin/comJ) [Bacillus velezensis strain 131-4]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVFRLNTSEPVLSYEKKATVPF
EVVKDGIEIESVMSKRLFFNIPKGRYSLTCYSVPAEISDLHADTYIIDADAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=285116 DA379_RS19045 WP_003156589.1 3781785..3782183(-) (nin/comJ) [Bacillus velezensis strain 131-4]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCGTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTCGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCTTCAGGCTTAACACAAGTGAACCGGTACTATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGTTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGACGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

78.295

97.727

0.765

Multiple sequence alignment