Detailed information NTG0285114

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: DA379_RS17860
• Genome accession: NZ_CP028441
• Coordinates: 3564621..3566000 (+)
• Length: 459 a.a.
• NCBI ID: WP_003156400.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain 131-4
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3559621..3571000

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DA379_RS17840	ctsR	3559970..3560434 (+)	465	WP_003156396.1	transcriptional regulator CtsR	-
DA379_RS17845	-	3560448..3561005 (+)	558	WP_003156397.1	UvrB/UvrC motif-containing protein	-
DA379_RS17850	-	3561005..3562096 (+)	1092	WP_003156398.1	protein arginine kinase	-
DA379_RS17855	clpC	3562093..3564527 (+)	2435	Protein_3448	ATP-dependent protease ATP-binding subunit ClpC	-
DA379_RS17860	radA	3564621..3566000 (+)	1380	WP_003156400.1	DNA repair protein RadA	Machinery gene
DA379_RS17865	disA	3566004..3567086 (+)	1083	WP_003156401.1	DNA integrity scanning diadenylate cyclase DisA	-
DA379_RS17870	-	3567200..3568300 (+)	1101	WP_003156403.1	PIN/TRAM domain-containing protein	-
DA379_RS17875	ispD	3568313..3569011 (+)	699	WP_003156405.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
DA379_RS17880	ispF	3569004..3569480 (+)	477	WP_003156407.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-

Sequence

Protein

• Length: 459 a.a.
• Molecular weight: 49553.04 Da
• Isoelectric Point: 7.4033

>NTDB_id=285114 DA379_RS17860 WP_003156400.1 3564621..3566000(+) (radA) [Bacillus velezensis strain 131-4]
MAKSKTKFICHSCGYESAKWMGKCPGCGAWNTMVEETIKKAPANRRAAFSHSVQTVQKPSPITSIETSEEPRVQTKLEEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLADTAGSVLYISGEESVKQTKLRADRLGIKSQMLHVLSETDMEYIS
SAIQEMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTNGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGASGSSIVASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLIMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPNPADCFIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMIIPEANADGWTIPKGIEVVGVANVAEALRTSLGGS

Nucleotide

• Length: 1380 bp

>NTDB_id=285114 DA379_RS17860 WP_003156400.1 3564621..3566000(+) (radA) [Bacillus velezensis strain 131-4]
ATGGCTAAATCAAAAACAAAATTCATCTGCCACTCATGCGGTTATGAATCCGCAAAATGGATGGGAAAGTGCCCGGGCTG
CGGGGCTTGGAATACAATGGTGGAAGAAACCATAAAAAAAGCGCCGGCGAATCGGCGGGCGGCTTTCTCCCACTCCGTTC
AAACCGTCCAGAAACCATCACCCATTACATCAATTGAAACATCAGAAGAACCCCGCGTTCAAACAAAGCTCGAAGAATTC
AACAGAGTGCTTGGCGGCGGCGTTGTGAAAGGCTCGTTAGTATTGATCGGCGGCGATCCCGGGATCGGAAAATCCACGCT
CCTTCTCCAAGTATCCGCACAATTAGCAGATACGGCCGGCAGCGTGCTTTACATTTCAGGGGAAGAATCCGTGAAGCAAA
CGAAGCTGCGCGCCGACAGACTTGGCATCAAAAGCCAAATGTTACATGTTTTATCTGAAACCGATATGGAGTATATTTCG
TCTGCTATACAAGAGATGAAACCCGCATTTGTTGTCGTAGACTCCATTCAGACCGTTTACCAAAGTGATATCACCTCAGC
TCCCGGCAGTGTATCACAAGTAAGAGAGTGTACGGCCGAATTGATGAAAATCGCGAAAACAAACGGCATACCTATTTTTA
TCGTCGGACACGTCACAAAAGAAGGATCGATCGCAGGGCCGAGATTGCTTGAGCACATGGTCGATACCGTTCTATACTTT
GAAGGAGAGCGGCATCATACATTCCGTATTTTGCGGGCCGTAAAAAACCGTTTCGGCTCAACAAATGAAATGGGCATCTT
TGAAATGCGGGAAGAGGGGCTTACGGAAGTGCTCAACCCTTCTGAAATTTTCTTGGAAGAGCGTTCTGCCGGGGCATCGG
GTTCGAGTATCGTTGCGTCAATGGAAGGAACGAGACCGATTCTGGTTGAAATCCAGGCGCTCATATCACCGACCAGTTTT
GGAAACCCGCGCCGCATGGCTACAGGCATTGACCACAACAGGGTATCGTTAATTATGGCTGTGCTTGAGAAGCGGGTGGG
TCTTTTGCTTCAAAATCAAGATGCATATTTAAAAGTCGCCGGCGGGGTCAAACTGGATGAACCGGCGATTGATTTGGCAG
TAGCCGTCAGCATTGCCTCAAGCTTCAGAGATACACCGCCGAATCCCGCAGATTGCTTTATCGGTGAAGTGGGTCTGACA
GGAGAAGTCCGCAGGGTGTCAAGAATCGAACAGCGCGTAAAAGAAGCGGCAAAACTCGGCTTCAAGCGCATGATCATACC
TGAGGCGAATGCAGACGGGTGGACAATACCAAAAGGGATTGAGGTTGTCGGAGTAGCAAATGTTGCAGAAGCGCTTCGTA
CTTCATTAGGAGGATCATAA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (71-222)

• Subunit ChlI of Mg-chelatase (ChlI) (364-430)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	93.231	99.782	0.93
radA	Streptococcus pneumoniae Rx1	63.797	98.693	0.63
radA	Streptococcus pneumoniae D39	63.797	98.693	0.63
radA	Streptococcus pneumoniae R6	63.797	98.693	0.63
radA	Streptococcus pneumoniae TIGR4	63.797	98.693	0.63
radA	Streptococcus mitis NCTC 12261	63.797	98.693	0.63
radA	Streptococcus mitis SK321	63.576	98.693	0.627