Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DA379_RS17525 Genome accession   NZ_CP028441
Coordinates   3503523..3503813 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain 131-4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3498523..3508813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA379_RS17485 darA 3498540..3498869 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  DA379_RS17490 - 3498882..3499322 (+) 441 WP_004264730.1 DUF327 family protein -
  DA379_RS17495 holB 3499334..3500323 (+) 990 WP_004264727.1 DNA polymerase III subunit delta' -
  DA379_RS17500 ricT 3500326..3501153 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  DA379_RS17505 yabA 3501168..3501527 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  DA379_RS17510 - 3501588..3502331 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DA379_RS17515 - 3502318..3502617 (+) 300 WP_004264714.1 GIY-YIG nuclease family protein -
  DA379_RS17520 rsmI 3502592..3503473 (+) 882 WP_014304192.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  DA379_RS17525 abrB 3503523..3503813 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  DA379_RS17530 metG 3504296..3506287 (+) 1992 WP_004264704.1 methionine--tRNA ligase -
  DA379_RS17535 - 3506363..3507130 (+) 768 WP_004264700.1 TatD family hydrolase -
  DA379_RS17540 - 3507265..3508590 (+) 1326 WP_088005470.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=285113 DA379_RS17525 WP_169510469.1 3503523..3503813(-) (abrB) [Bacillus velezensis strain 131-4]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=285113 DA379_RS17525 WP_169510469.1 3503523..3503813(-) (abrB) [Bacillus velezensis strain 131-4]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment