Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DA379_RS09955 Genome accession   NZ_CP028441
Coordinates   2053940..2054707 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain 131-4     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2048940..2059707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA379_RS09935 - 2049142..2049954 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  DA379_RS09940 ccpN 2049980..2050618 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  DA379_RS09945 glyS 2050719..2052758 (-) 2040 WP_003152986.1 glycine--tRNA ligase subunit beta -
  DA379_RS09950 glyQ 2052751..2053638 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  DA379_RS09955 recO 2053940..2054707 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  DA379_RS09960 - 2054744..2054887 (-) 144 WP_003152980.1 YqzL family protein -
  DA379_RS09965 era 2055043..2055948 (-) 906 WP_003152978.1 GTPase Era -
  DA379_RS09970 - 2055929..2056339 (-) 411 WP_003152976.1 cytidine deaminase -
  DA379_RS09975 - 2056463..2056837 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  DA379_RS09980 ybeY 2056818..2057291 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  DA379_RS09985 - 2057292..2059424 (-) 2133 WP_003152972.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=285082 DA379_RS09955 WP_003152982.1 2053940..2054707(-) (recO) [Bacillus velezensis strain 131-4]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=285082 DA379_RS09955 WP_003152982.1 2053940..2054707(-) (recO) [Bacillus velezensis strain 131-4]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACATTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894

Multiple sequence alignment