Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   DA379_RS09640 Genome accession   NZ_CP028441
Coordinates   2002836..2003171 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain 131-4     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1997836..2008171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA379_RS09620 gcvT 1998447..1999547 (-) 1101 WP_003153108.1 glycine cleavage system aminomethyltransferase GcvT -
  DA379_RS09625 - 1999970..2001640 (+) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  DA379_RS09630 - 2001658..2002452 (+) 795 WP_003153106.1 YqhG family protein -
  DA379_RS09635 sinI 2002629..2002802 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  DA379_RS09640 sinR 2002836..2003171 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  DA379_RS09645 tasA 2003219..2004004 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  DA379_RS09650 sipW 2004068..2004652 (-) 585 WP_003153100.1 signal peptidase I SipW -
  DA379_RS09655 tapA 2004624..2005295 (-) 672 WP_003153099.1 amyloid fiber anchoring/assembly protein TapA -
  DA379_RS09660 - 2005554..2005883 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  DA379_RS09665 - 2005923..2006102 (-) 180 WP_003153093.1 YqzE family protein -
  DA379_RS09670 comGG 2006159..2006536 (-) 378 WP_003153092.1 competence type IV pilus minor pilin ComGG Machinery gene
  DA379_RS09675 comGF 2006537..2007037 (-) 501 WP_223203779.1 competence type IV pilus minor pilin ComGF -
  DA379_RS09680 comGE 2006946..2007260 (-) 315 WP_003153089.1 competence type IV pilus minor pilin ComGE -
  DA379_RS09685 comGD 2007244..2007681 (-) 438 WP_003153088.1 competence type IV pilus minor pilin ComGD Machinery gene
  DA379_RS09690 comGC 2007671..2007937 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=285076 DA379_RS09640 WP_003153104.1 2002836..2003171(+) (sinR) [Bacillus velezensis strain 131-4]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=285076 DA379_RS09640 WP_003153104.1 2002836..2003171(+) (sinR) [Bacillus velezensis strain 131-4]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment