Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   DA379_RS08385 Genome accession   NZ_CP028441
Coordinates   1722935..1723543 (+) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus velezensis strain 131-4     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1717935..1728543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA379_RS08345 - 1718988..1719494 (-) 507 WP_003153536.1 PTS glucose transporter subunit IIA -
  DA379_RS08350 - 1719633..1720046 (+) 414 WP_003153535.1 hypothetical protein -
  DA379_RS08355 - 1720076..1720510 (-) 435 WP_003153534.1 YppG family protein -
  DA379_RS08360 - 1720697..1720879 (+) 183 WP_003153532.1 YppF family protein -
  DA379_RS08365 - 1720918..1721286 (-) 369 WP_003153529.1 YppE family protein -
  DA379_RS08370 - 1721332..1721577 (-) 246 WP_003153527.1 DUF5446 family protein -
  DA379_RS08375 sspM 1721783..1721887 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  DA379_RS08380 - 1721931..1722893 (-) 963 WP_014305287.1 DUF2515 domain-containing protein -
  DA379_RS08385 recU 1722935..1723543 (+) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  DA379_RS08390 - 1723582..1726365 (+) 2784 WP_003153519.1 PBP1A family penicillin-binding protein -
  DA379_RS08395 - 1726443..1726934 (-) 492 WP_003153518.1 YpoC family protein -
  DA379_RS08400 nth 1726931..1727590 (-) 660 WP_003153517.1 endonuclease III -
  DA379_RS08405 dnaD 1727609..1728307 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=285072 DA379_RS08385 WP_003153521.1 1722935..1723543(+) (recU) [Bacillus velezensis strain 131-4]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=285072 DA379_RS08385 WP_003153521.1 1722935..1723543(+) (recU) [Bacillus velezensis strain 131-4]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATCGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896

Multiple sequence alignment