Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   DA379_RS05050 Genome accession   NZ_CP028441
Coordinates   935095..935559 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain 131-4     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 930095..940559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA379_RS05030 - 930575..932395 (+) 1821 WP_003154628.1 PAS domain-containing protein -
  DA379_RS05035 - 932421..933590 (-) 1170 WP_003154626.1 aminotransferase A -
  DA379_RS19635 - 933791..933952 (-) 162 WP_003154625.1 hypothetical protein -
  DA379_RS05045 cheV 934141..935052 (+) 912 WP_003154623.1 chemotaxis protein CheV -
  DA379_RS05050 kre 935095..935559 (-) 465 WP_003154622.1 YkyB family protein Regulator
  DA379_RS05055 - 935682..936974 (-) 1293 WP_003154621.1 MFS transporter -
  DA379_RS05060 - 937050..937544 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  DA379_RS05065 - 937619..938482 (-) 864 WP_003154619.1 metallophosphoesterase -
  DA379_RS05070 fadH 938626..939390 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  DA379_RS05075 - 939501..940046 (+) 546 Protein_983 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=285064 DA379_RS05050 WP_003154622.1 935095..935559(-) (kre) [Bacillus velezensis strain 131-4]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=285064 DA379_RS05050 WP_003154622.1 935095..935559(-) (kre) [Bacillus velezensis strain 131-4]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment