Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | DA378_RS19180 | Genome accession | NZ_CP028440 |
| Coordinates | 3837592..3837858 (+) | Length | 88 a.a. |
| NCBI ID | WP_042635730.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain J7-1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3832592..3842858
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DA378_RS19160 | - | 3832862..3834163 (-) | 1302 | WP_003153081.1 | hemolysin family protein | - |
| DA378_RS19165 | - | 3834309..3835259 (+) | 951 | WP_003153082.1 | magnesium transporter CorA family protein | - |
| DA378_RS19170 | comGA | 3835451..3836521 (+) | 1071 | WP_003153083.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DA378_RS19175 | comGB | 3836508..3837545 (+) | 1038 | WP_003153086.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DA378_RS19180 | comGC | 3837592..3837858 (+) | 267 | WP_042635730.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DA378_RS19185 | comGD | 3837848..3838285 (+) | 438 | WP_003153088.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| DA378_RS19190 | comGE | 3838269..3838583 (+) | 315 | WP_003153089.1 | competence type IV pilus minor pilin ComGE | - |
| DA378_RS19885 | comGF | 3838776..3838991 (+) | 216 | WP_254051908.1 | ComGF family competence protein | Machinery gene |
| DA378_RS19200 | comGG | 3838992..3839369 (+) | 378 | WP_003153092.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| DA378_RS19205 | - | 3839426..3839605 (+) | 180 | WP_003153093.1 | YqzE family protein | - |
| DA378_RS19210 | - | 3839645..3839974 (-) | 330 | WP_003153097.1 | DUF3889 domain-containing protein | - |
| DA378_RS19215 | tapA | 3840233..3840904 (+) | 672 | WP_003153099.1 | amyloid fiber anchoring/assembly protein TapA | - |
| DA378_RS19220 | sipW | 3840876..3841460 (+) | 585 | WP_003153100.1 | signal peptidase I SipW | - |
| DA378_RS19225 | tasA | 3841524..3842309 (+) | 786 | WP_003153102.1 | biofilm matrix protein TasA | - |
| DA378_RS19230 | sinR | 3842357..3842692 (-) | 336 | WP_003153104.1 | transcriptional regulator SinR | Regulator |
Sequence
Protein
Download Length: 88 a.a. Molecular weight: 9721.32 Da Isoelectric Point: 6.2027
>NTDB_id=285039 DA378_RS19180 WP_042635730.1 3837592..3837858(+) (comGC) [Bacillus velezensis strain J7-1]
MLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIKKNTACPNGKQILIS
GGEVTVEQ
MLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIKKNTACPNGKQILIS
GGEVTVEQ
Nucleotide
Download Length: 267 bp
>NTDB_id=285039 DA378_RS19180 WP_042635730.1 3837592..3837858(+) (comGC) [Bacillus velezensis strain J7-1]
ATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTTAATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCA
GCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAGCCCAAGTGACGGCGTACGAAATCGACCATGAAGGTAAAATGC
CGGATATGAACGATTTACAATCAGAGGGGTATATCAAAAAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGT
GGCGGAGAAGTTACAGTTGAACAATAA
ATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTTAATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCA
GCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAGCCCAAGTGACGGCGTACGAAATCGACCATGAAGGTAAAATGC
CGGATATGAACGATTTACAATCAGAGGGGTATATCAAAAAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGT
GGCGGAGAAGTTACAGTTGAACAATAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
74.648 |
80.682 |
0.602 |