Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DA378_RS18915 Genome accession   NZ_CP028440
Coordinates   3790823..3791590 (+) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain J7-1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3785823..3796590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA378_RS18885 - 3786106..3788238 (+) 2133 WP_003152972.1 HD family phosphohydrolase -
  DA378_RS18890 ybeY 3788239..3788712 (+) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  DA378_RS18895 - 3788693..3789067 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  DA378_RS18900 - 3789191..3789601 (+) 411 WP_003152976.1 cytidine deaminase -
  DA378_RS18905 era 3789582..3790487 (+) 906 WP_003152978.1 GTPase Era -
  DA378_RS18910 - 3790643..3790786 (+) 144 WP_003152980.1 YqzL family protein -
  DA378_RS18915 recO 3790823..3791590 (+) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  DA378_RS18920 glyQ 3791892..3792779 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  DA378_RS18925 glyS 3792772..3794811 (+) 2040 WP_003152986.1 glycine--tRNA ligase subunit beta -
  DA378_RS18930 ccpN 3794912..3795550 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  DA378_RS18935 - 3795576..3796388 (+) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=285036 DA378_RS18915 WP_003152982.1 3790823..3791590(+) (recO) [Bacillus velezensis strain J7-1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=285036 DA378_RS18915 WP_003152982.1 3790823..3791590(+) (recO) [Bacillus velezensis strain J7-1]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACATTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894

Multiple sequence alignment