Detailed information NTG0285019

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EGY23_RS14215
• Genome accession: NZ_CP033832
• Coordinates: 3003739..3004743 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain FDAARGOS_505
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2998739..3009743

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGY23_RS14185 (EGY23_14140)	fghA	2998831..2999682 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
EGY23_RS14190 (EGY23_14145)	ispF	2999753..3000226 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EGY23_RS14195 (EGY23_14150)	truD	3000223..3001290 (+)	1068	WP_016852567.1	tRNA pseudouridine(13) synthase TruD	-
EGY23_RS14200 (EGY23_14155)	surE	3001278..3002027 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
EGY23_RS14205 (EGY23_14160)	-	3002060..3002695 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EGY23_RS14210 (EGY23_14165)	-	3002741..3003634 (+)	894	WP_016852568.1	peptidoglycan DD-metalloendopeptidase family protein	-
EGY23_RS14215 (EGY23_14170)	rpoS	3003739..3004743 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
EGY23_RS14220 (EGY23_14175)	fdxA	3005170..3005493 (-)	324	WP_003119354.1	ferredoxin FdxA	-
EGY23_RS14225 (EGY23_14180)	mutS	3005560..3008127 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
EGY23_RS14235 (EGY23_14190)	-	3008253..3009260 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=285019 EGY23_RS14215 WP_003113871.1 3003739..3004743(+) (rpoS) [Pseudomonas aeruginosa strain FDAARGOS_505]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=285019 EGY23_RS14215 WP_003113871.1 3003739..3004743(+) (rpoS) [Pseudomonas aeruginosa strain FDAARGOS_505]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653