Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   DA378_RS14315 Genome accession   NZ_CP028440
Coordinates   2915543..2916232 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain J7-1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2910543..2921232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA378_RS14295 - 2911048..2912124 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  DA378_RS14300 - 2912214..2913428 (-) 1215 WP_003151383.1 LCP family protein -
  DA378_RS14305 - 2913433..2914080 (-) 648 WP_003151384.1 YigZ family protein -
  DA378_RS14310 degS 2914303..2915466 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  DA378_RS14315 degU 2915543..2916232 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DA378_RS14320 - 2916330..2917178 (+) 849 WP_003151387.1 DegV family protein -
  DA378_RS14325 comFA 2917286..2918671 (+) 1386 WP_003151388.1 DEAD/DEAH box helicase Machinery gene
  DA378_RS14330 - 2918729..2919013 (+) 285 WP_003151389.1 competence protein ComFB -
  DA378_RS14335 comFC 2919019..2919708 (+) 690 WP_198317760.1 phosphoribosyltransferase family protein Machinery gene
  DA378_RS14340 - 2919782..2920201 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  DA378_RS14345 flgM 2920271..2920537 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  DA378_RS14350 - 2920552..2921034 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=285015 DA378_RS14315 WP_003219701.1 2915543..2916232(+) (degU) [Bacillus velezensis strain J7-1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=285015 DA378_RS14315 WP_003219701.1 2915543..2916232(+) (degU) [Bacillus velezensis strain J7-1]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment