Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EGY23_RS09780 Genome accession   NZ_CP033832
Coordinates   2087431..2087940 (+) Length   169 a.a.
NCBI ID   WP_008643200.1    Uniprot ID   A0ABV9GW20
Organism   Pseudomonas aeruginosa strain FDAARGOS_505     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2082431..2092940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY23_RS09760 (EGY23_09710) - 2083359..2083553 (-) 195 WP_003113235.1 hypothetical protein -
  EGY23_RS09765 (EGY23_09715) dnr 2083637..2084320 (-) 684 WP_003113234.1 transcriptional regulator Dnr -
  EGY23_RS09770 (EGY23_09720) - 2084827..2086029 (+) 1203 WP_023083128.1 site-specific integrase -
  EGY23_RS09775 (EGY23_09725) - 2086026..2087090 (+) 1065 WP_023083127.1 YhcG family protein -
  EGY23_RS09780 (EGY23_09730) radC 2087431..2087940 (+) 510 WP_008643200.1 DNA repair protein RadC Machinery gene
  EGY23_RS09785 (EGY23_09735) arsH 2087982..2088704 (-) 723 WP_031668144.1 arsenical resistance protein ArsH -
  EGY23_RS09790 (EGY23_09740) arsC 2088697..2089119 (-) 423 WP_023083125.1 arsenate reductase (glutaredoxin) -
  EGY23_RS09795 (EGY23_09745) arsB 2089134..2090213 (-) 1080 WP_021204056.1 ACR3 family arsenite efflux transporter -
  EGY23_RS09800 (EGY23_09750) arsA 2090243..2092009 (-) 1767 WP_023083124.1 arsenical pump-driving ATPase -
  EGY23_RS09805 (EGY23_09755) arsD 2092023..2092382 (-) 360 WP_023083123.1 arsenite efflux transporter metallochaperone ArsD -
  EGY23_RS09810 (EGY23_09760) - 2092424..2092921 (-) 498 WP_008643209.1 arsenate reductase ArsC -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18535.12 Da        Isoelectric Point: 6.3365

>NTDB_id=285011 EGY23_RS09780 WP_008643200.1 2087431..2087940(+) (radC) [Pseudomonas aeruginosa strain FDAARGOS_505]
MSQLSFSSFDASLMVRDAQGRYLLATADQILEAARQAIEYKMQRGASFSSPVAVKEYLSAKLAGFEHEVFAVLFLDTQHR
LIEYSELFRGTIDSASVYPRELVKEALRLNAAAVIVSHNHPSGNPEPSGADKVLTQRLREALALVDVRTLDHIIVAGGST
ISFAERGLI

Nucleotide


Download         Length: 510 bp        

>NTDB_id=285011 EGY23_RS09780 WP_008643200.1 2087431..2087940(+) (radC) [Pseudomonas aeruginosa strain FDAARGOS_505]
ATGTCGCAACTGTCCTTTTCCTCGTTCGATGCCTCGCTGATGGTGCGCGATGCACAGGGCCGCTACCTGCTGGCGACGGC
CGACCAAATTCTGGAGGCCGCACGCCAGGCCATCGAGTACAAGATGCAGCGCGGTGCGTCGTTCAGTTCGCCGGTGGCGG
TCAAGGAGTACCTGAGCGCCAAGTTGGCTGGTTTCGAGCATGAAGTCTTCGCTGTGCTGTTCTTGGATACGCAGCATCGC
CTGATCGAATACAGCGAGCTTTTCCGAGGCACCATCGACAGTGCATCGGTGTATCCACGCGAGCTGGTCAAGGAGGCGCT
GCGGCTCAATGCGGCAGCGGTCATCGTTTCGCACAACCATCCGAGCGGCAACCCCGAACCGAGCGGCGCCGACAAGGTAC
TGACCCAGCGGCTCAGGGAGGCGCTGGCGCTGGTGGATGTCCGCACGCTGGATCACATCATCGTGGCGGGTGGCAGCACC
ATATCCTTCGCCGAACGCGGTCTGATTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

46.429

82.84

0.385