Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DA378_RS11340 Genome accession   NZ_CP028440
Coordinates   2341715..2342005 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain J7-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2336715..2347005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA378_RS11325 - 2336938..2338263 (-) 1326 WP_088005470.1 G5 and 3D domain-containing protein -
  DA378_RS11330 - 2338398..2339165 (-) 768 WP_004264700.1 TatD family hydrolase -
  DA378_RS11335 metG 2339241..2341232 (-) 1992 WP_004264704.1 methionine--tRNA ligase -
  DA378_RS11340 abrB 2341715..2342005 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  DA378_RS11345 rsmI 2342055..2342936 (-) 882 WP_014304192.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  DA378_RS11350 - 2342911..2343210 (-) 300 WP_004264714.1 GIY-YIG nuclease family protein -
  DA378_RS11355 - 2343197..2343940 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DA378_RS11360 yabA 2344001..2344360 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  DA378_RS11365 ricT 2344375..2345202 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  DA378_RS11370 holB 2345205..2346194 (-) 990 WP_004264727.1 DNA polymerase III subunit delta' -
  DA378_RS11375 - 2346206..2346646 (-) 441 WP_004264730.1 DUF327 family protein -
  DA378_RS11380 darA 2346659..2346988 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=285004 DA378_RS11340 WP_169510469.1 2341715..2342005(+) (abrB) [Bacillus velezensis strain J7-1]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=285004 DA378_RS11340 WP_169510469.1 2341715..2342005(+) (abrB) [Bacillus velezensis strain J7-1]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment